Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG344_RS14670 Genome accession   NZ_CP033922
Coordinates   3217434..3218783 (-) Length   449 a.a.
NCBI ID   WP_123857706.1    Uniprot ID   A0AAD0YLH8
Organism   Chryseobacterium sp. G0162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3212434..3223783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG344_RS14645 (EG344_14760) - 3213747..3214268 (+) 522 WP_123910050.1 DUF6702 family protein -
  EG344_RS14650 (EG344_14765) - 3214265..3214858 (-) 594 WP_123910051.1 ACP phosphodiesterase -
  EG344_RS14655 (EG344_14770) - 3214855..3215562 (-) 708 WP_123910052.1 VanW family protein -
  EG344_RS14660 (EG344_14775) - 3215559..3216230 (-) 672 WP_123910053.1 class I SAM-dependent methyltransferase -
  EG344_RS14665 (EG344_14780) - 3216315..3217421 (-) 1107 WP_123910054.1 AraC family transcriptional regulator -
  EG344_RS14670 (EG344_14785) radA 3217434..3218783 (-) 1350 WP_123857706.1 DNA repair protein RadA Machinery gene
  EG344_RS14675 (EG344_14790) - 3218924..3219493 (+) 570 WP_123910055.1 YceI family protein -
  EG344_RS14680 (EG344_14795) - 3219657..3221309 (+) 1653 WP_123910056.1 right-handed parallel beta-helix repeat-containing protein -
  EG344_RS14685 (EG344_14800) - 3221499..3223109 (+) 1611 WP_123910057.1 CTP synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49972.66 Da        Isoelectric Point: 6.6094

>NTDB_id=327140 EG344_RS14670 WP_123857706.1 3217434..3218783(-) (radA) [Chryseobacterium sp. G0162]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVIEKPNSKSVPFSKTKQHVINIIEVETSEEPRLKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPI
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=327140 EG344_RS14670 WP_123857706.1 3217434..3218783(-) (radA) [Chryseobacterium sp. G0162]
ATGGCAAAACTGAAAACGGCATATTTCTGTCAAAATTGCGGAACCCAATATTCCCAATGGATGGGACAATGTAAAAACTG
TGGACAATGGAATACCCTGGTGGAAGAAGTGATAGAGAAGCCCAACAGCAAGTCGGTGCCCTTCTCTAAAACCAAGCAAC
ATGTTATCAACATTATTGAGGTAGAAACCAGTGAAGAACCGAGATTAAAAACACCTTCCGAAGAACTGAACCGCGTTCTG
GGAGGCGGAATTGTCTTAGGTTCCGTCACCCTGATTGGTGGAGAACCGGGAATCGGAAAATCTACCCTATTGCTTCAGCT
TGCCTTAAAAATGAAGAAAAAGATCTTCTATGTTTCTGGGGAAGAAAGCGCTTCTCAGATTAAAATGAGAGCCGATAGAC
TAACGGACATTCAAAATCCGAATTGTTTTCTTTTTACAGAAACCTCCCTGGAAAAAATTCTTCATGAAGCAAAAAAACTG
GAACCGGATTTCATGATTATTGATTCTATCCAGACGCTTCAGTCCCAACTGATCGAAAGTTCTCCCGGAACGGTTTCTCA
AATCAGAGAATGCTCCAACGAGATCATTAAATACGCTAAAGAAAACAGTATTCCTGTATTTTTGGTGGGCCATATTACCA
AAGACGGTCAGATTGCCGGTCCAAAGGTATTGGAACACATGGTAGATGTTGTTTTAAATTTTGATGGAGACCGAAATCAC
CTTTTCAGATTATTGAGAGCGAACAAAAACCGTTTTGGTTCTACTTCTGAAATTGGAATTTATGAAATGATCTCCCAGGG
ATTGAAGGAAATTAAAAATCCTTCGGAAATCCTTATCACTAAGAAATTTGAAGAACTTTCCGGAAACTCTGTTGCCGTAA
CCCTGGAAGGAAACAGGCCGATGCTTTTGGAGATCCAGGCATTGGTAAGTACAGCCGTGTATGGAACTCCTCAAAGAAGC
TGTACAGGATTTGATTCAAAAAGACTGAATATGCTTCTGGCAGTGCTTGAAAAAAGAGCAGGATTCCAATTAGGAGCAAA
AGACGTTTTCCTTAATATCACAGGAGGAATAAAAACAGATGACCCAGCGCTGGATCTGGCAGTCATAGCTTCTGTTCTTT
CATCCAATGAGGACATCGCCATTTCAGAACATTACTGTTTTGCCGGAGAAATCGGGTTAAGTGGAGAAATACGTCCGATT
GCCCAAGTCGAACAAAGAATTACTGAAGCTGAAAAGCTAGGTTATGAGAAGATATTCGTTTCCAATCTTAATAAAATTCC
GAAAAGAAAATTTGGAATCAAGATTGAAGAGGTAAGCAAGATTGAAGATTTCCACGAAAGGCTTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.494
  radA Streptococcus pneumoniae Rx1

47.807

100

0.486
  radA Streptococcus pneumoniae D39

47.807

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.486
  radA Streptococcus pneumoniae R6

47.807

100

0.486
  radA Streptococcus mitis NCTC 12261

47.807

100

0.486
  radA Streptococcus mitis SK321

49.645

94.209

0.468

Multiple sequence alignment