Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG346_RS10130 Genome accession   NZ_CP033920
Coordinates   2209616..2210965 (-) Length   449 a.a.
NCBI ID   WP_123878405.1    Uniprot ID   -
Organism   Chryseobacterium carnipullorum strain G0188     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204616..2215965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG346_RS10110 (EG346_10180) - 2206425..2206940 (+) 516 WP_073334233.1 DUF6702 family protein -
  EG346_RS10115 (EG346_10185) - 2207595..2208191 (-) 597 WP_073334235.1 ACP phosphodiesterase -
  EG346_RS10120 (EG346_10190) - 2208188..2208892 (-) 705 WP_164466095.1 VanW family protein -
  EG346_RS10125 (EG346_10195) - 2208889..2209557 (-) 669 WP_228425782.1 class I SAM-dependent methyltransferase -
  EG346_RS10130 (EG346_10200) radA 2209616..2210965 (-) 1350 WP_123878405.1 DNA repair protein RadA Machinery gene
  EG346_RS10135 (EG346_10205) - 2211021..2211431 (+) 411 WP_123878407.1 hypothetical protein -
  EG346_RS10140 (EG346_10210) - 2211493..2212062 (+) 570 WP_123878409.1 YceI family protein -
  EG346_RS10145 (EG346_10215) - 2212223..2213917 (-) 1695 WP_123878411.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  EG346_RS10150 (EG346_10220) - 2213921..2215291 (-) 1371 WP_164466377.1 phosphatase PAP2 family protein -
  EG346_RS10155 (EG346_10225) - 2215198..2215959 (-) 762 WP_123878415.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49855.45 Da        Isoelectric Point: 6.6122

>NTDB_id=327107 EG346_RS10130 WP_123878405.1 2209616..2210965(-) (radA) [Chryseobacterium carnipullorum strain G0188]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGEWNTLVEEVVEKTSSKTPPFSKSKQHVINIIEVVTSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDLQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIRNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPI
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=327107 EG346_RS10130 WP_123878405.1 2209616..2210965(-) (radA) [Chryseobacterium carnipullorum strain G0188]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATTCCCAATGGATGGGGCAATGCAAAAACTG
CGGAGAATGGAACACCCTTGTAGAAGAAGTCGTTGAGAAAACCTCATCTAAAACTCCCCCTTTTTCAAAATCAAAACAGC
ATGTCATCAACATCATTGAAGTGGTGACCAGCGAAGAACCCAGGATAAAAACACCTTCCGAAGAACTGAACCGTGTTCTG
GGCGGAGGTATTGTACTGGGTTCAGTAACTTTGATAGGTGGAGAGCCCGGAATCGGAAAATCTACGCTTTTGCTTCAGCT
GGCTTTAAAGATGAAGAAGAAAGTATTTTATGTTTCCGGAGAGGAAAGCGCTTCACAAATAAAAATGAGAGCGGACAGGC
TGACAGATCTTCAGAATCCTAACTGTTTTCTTTTTACGGAAACTTCACTGGAAAAGATTCTTCACGAAGCCAAAAAACTG
GAACCTGATTTTATGATCATCGATTCCATTCAAACTTTACAATCTCAGTTAATCGAAAGTTCACCTGGAACCGTTTCCCA
GATCAGGGAATGCTCCAATGAGATCATCAAATATGCAAAAGAAAACAATACTCCCGTTTTCCTTGTAGGCCATATTACAA
AGGATGGCCAGATTGCAGGACCTAAGGTATTGGAACATATGGTAGATGTAGTTTTAAATTTTGATGGCGACAGAAATCAT
CTTTTCAGATTGCTAAGGGCCAATAAAAACCGTTTCGGATCTACTGCCGAGATTGGAATTTATGAAATGGTTTCCCAAGG
TTTAAAAGAGATCAGAAATCCTTCTGAAATCCTCATTACCAAAAAATTCGAAGAACTTTCCGGAAACTCTGTGGCAGTCA
CTTTGGAAGGAAACCGACCGATGTTGCTTGAAATCCAGGCACTGGTTAGTACAGCTGTTTATGGAACTCCTCAAAGAAGC
TCCACCGGATTTGACGCCAAAAGACTGAATATGCTTCTGGCCGTTCTTGAAAAGCGGGCAGGTTTTCAGTTGGGCGCTAA
AGATGTCTTTTTAAATATTACCGGAGGAATTAAAACGGATGATCCTGCTTTGGATCTTGCCGTAGTAGCTTCTATCCTGT
CTTCCAATGAAGACATTGCGATTTCCGAGCATTTCTGTTTTGCCGGAGAAATCGGGTTAAGTGGAGAGATTCGTCCTATT
GCGCAGGTTGAACAGAGAATTACAGAAGCTGAAAAATTAGGGTACGAAAAAATATTTGTCTCCAACCTGAACAAAATTCC
GAAAAGAAAATTTGGAATTAAGATTGAGGAAGTGAGCAAAATTGAAGATTTCCATGAAAGAATTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.845

100

0.494
  radA Streptococcus pneumoniae Rx1

47.845

100

0.494
  radA Streptococcus pneumoniae D39

47.845

100

0.494
  radA Streptococcus pneumoniae TIGR4

47.845

100

0.494
  radA Streptococcus mitis NCTC 12261

47.845

100

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

100

0.492
  radA Streptococcus mitis SK321

47.619

100

0.49

Multiple sequence alignment