Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG348_RS03555 Genome accession   NZ_CP033917
Coordinates   808587..809936 (+) Length   449 a.a.
NCBI ID   WP_123980739.1    Uniprot ID   A0A3G6MAW0
Organism   Chryseobacterium sp. G0201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 803587..814936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG348_RS03535 (EG348_03545) - 803745..805115 (+) 1371 WP_123980732.1 phosphatase PAP2/dual specificity phosphatase family protein -
  EG348_RS03540 (EG348_03550) - 805118..806812 (+) 1695 WP_123980734.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  EG348_RS03545 (EG348_03555) - 806941..807513 (-) 573 WP_123980736.1 YceI family protein -
  EG348_RS03550 (EG348_03560) - 807635..808441 (-) 807 WP_123980737.1 hypothetical protein -
  EG348_RS03555 (EG348_03565) radA 808587..809936 (+) 1350 WP_123980739.1 DNA repair protein RadA Machinery gene
  EG348_RS03560 (EG348_03570) - 810023..811570 (+) 1548 WP_123980741.1 zinc-dependent metalloprotease -
  EG348_RS03565 (EG348_03575) - 811655..812254 (+) 600 WP_123980743.1 ACP phosphodiesterase -
  EG348_RS03570 (EG348_03580) - 812351..813160 (-) 810 WP_123980745.1 hypothetical protein -
  EG348_RS03575 (EG348_03585) - 813483..814007 (-) 525 WP_317126998.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49805.39 Da        Isoelectric Point: 6.3230

>NTDB_id=327070 EG348_RS03555 WP_123980739.1 808587..809936(+) (radA) [Chryseobacterium sp. G0201]
MAKLKTAYFCQSCGTQYSQWMGQCKNCGEWNTLVEEVVEKTSSKTPPFTKTKQHVINIVEVETIEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDVQNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVIASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEVIFVSNLNKIAKRKHGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=327070 EG348_RS03555 WP_123980739.1 808587..809936(+) (radA) [Chryseobacterium sp. G0201]
ATGGCAAAACTAAAAACAGCATATTTCTGTCAGAGCTGCGGAACACAGTATTCTCAGTGGATGGGACAATGCAAAAACTG
TGGAGAATGGAATACTTTGGTGGAAGAAGTGGTAGAAAAAACCTCATCTAAGACACCACCCTTTACGAAAACGAAGCAAC
ACGTCATCAATATTGTTGAAGTTGAAACAATAGAAGAACCCCGTATAAAAACTCCTTCCGAAGAACTTAATCGTGTTTTG
GGAGGCGGAATTGTTTTAGGTTCCGTTACTTTAATCGGCGGTGAACCGGGAATTGGAAAATCGACGTTGCTTTTACAACT
TGCCTTGAAAATGAAGAAAAAAGTTTTTTATGTTTCGGGGGAAGAAAGTGCTTCTCAGATCAAAATGAGAGCCGATAGAT
TAACGGATGTTCAAAATCCGAACTGTTTTCTTTACACAGAAACTTCACTGGAGAAAATTCTTCATGAAGCCAAAAAGCTG
GAGCCTGACTTTGTTATTATCGATTCAATTCAGACTTTACAATCACAATTAATTGAAAGTTCGCCCGGAACGGTTTCTCA
GATCAGAGAATGTTCCAACGAGATCATTAAATATGCTAAAGAAAATAATGTTCCTGTTTTCTTGGTTGGTCACATTACGA
AAGACGGACAAATTGCAGGGCCAAAAGTCTTGGAACACATGGTAGATGTCGTTCTAAATTTTGACGGAGACAGAAATCAC
CTTTTCAGATTATTGAGAGCCAATAAAAATCGTTTTGGGTCAACCGCAGAAATCGGAATTTACGAAATGGTTTCTCAAGG
TTTAAAGGAAATTAAAAATCCATCCGAGATTTTAATTACTAAAAAATTCGAAGAGCTTTCCGGAAATTCTGTTGCCGTAA
CTTTAGAAGGAAACCGACCGATGTTATTGGAAATTCAGGCGTTGGTAAGTACTGCCGTTTATGGAACTCCGCAAAGAAGC
TGTACCGGTTTTGATGCCAAAAGACTGAATATGTTGTTGGCTGTTCTTGAAAAACGAGCAGGTTTTCAATTAGGCTCAAA
AGACGTTTTCTTAAATATTACCGGAGGAATAAAAACCGACGATCCGGCTTTGGATCTTGCGGTTATTGCCTCTATTTTGT
CTTCAAATGAAGATATTGCGATCTCTGAACATTTTTGCTTTGCGGGAGAAATTGGTTTAAGTGGTGAGATCCGTCCGGTT
GCACAGGTCGAACAGAGAATTACTGAGGCTGAAAAACTAGGTTACGAGGTTATTTTTGTTTCCAATCTTAATAAAATTGC
CAAAAGAAAACACGGTATCAAAATAGAAGAAGTAAGTAAAATTGAGGATTTTCATGAAAGATTGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6MAW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.494
  radA Streptococcus mitis NCTC 12261

48.238

100

0.488
  radA Streptococcus pneumoniae Rx1

48.238

100

0.488
  radA Streptococcus pneumoniae D39

48.238

100

0.488
  radA Streptococcus pneumoniae R6

48.238

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.238

100

0.488
  radA Streptococcus mitis SK321

50.118

94.209

0.472

Multiple sequence alignment