Detailed information NTG0327067

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EG348_RS02580
• Genome accession: NZ_CP033917
• Coordinates: 569046..569708 (+)
• Length: 220 a.a.
• NCBI ID: WP_317126994.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. G0201
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 564046..574708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG348_RS02565 (EG348_02580)	aceA	564162..565442 (-)	1281	WP_123980394.1	isocitrate lyase	-
EG348_RS02570 (EG348_02585)	aceB	565576..567150 (-)	1575	WP_123980396.1	malate synthase A	-
EG348_RS02575 (EG348_02590)	-	567278..568753 (+)	1476	WP_123980398.1	helix-turn-helix domain-containing protein	-
EG348_RS02580 (EG348_02595)	comF	569046..569708 (+)	663	WP_317126994.1	ComF family protein	Machinery gene
EG348_RS02585 (EG348_02600)	-	569985..570674 (+)	690	WP_123980400.1	alpha/beta fold hydrolase	-
EG348_RS02590 (EG348_02605)	upp	570676..571329 (-)	654	WP_123980402.1	uracil phosphoribosyltransferase	-
EG348_RS02595 (EG348_02610)	der	571414..572724 (-)	1311	WP_072407776.1	ribosome biogenesis GTPase Der	-
EG348_RS02600 (EG348_02615)	-	572861..573484 (-)	624	WP_123980404.1	hypothetical protein	-

Sequence

Protein

• Length: 220 a.a.
• Molecular weight: 25660.86 Da
• Isoelectric Point: 8.5910

>NTDB_id=327067 EG348_RS02580 WP_317126994.1 569046..569708(+) (comF) [Chryseobacterium sp. G0201]
MKDIFLDLLFPNRCLDCNKIIESNLIVCNICFGKIQFTHFDYFEENTLKEICKTLFPVENAYALIQFEKESLSRKIIHEL
KYKNREKTGKILADWITERVDFKNEKPDLIVSIPLHKKKLKERGYNQLHLFAETLSEFYNIPFDHEVILRSYYSKAQALK
DKKHRLSTENLFAINKNISGKHVLLVDDVFTTGNTIATAAWEILKTGNNKVSVLVMAIDK

Nucleotide

• Length: 663 bp

>NTDB_id=327067 EG348_RS02580 WP_317126994.1 569046..569708(+) (comF) [Chryseobacterium sp. G0201]
TTGAAAGATATATTTCTTGATCTGTTATTCCCAAACCGTTGCTTAGATTGTAATAAAATTATTGAAAGCAATCTTATCGT
CTGCAATATATGTTTCGGAAAAATTCAGTTTACGCATTTTGACTATTTTGAGGAAAATACACTTAAAGAAATATGTAAAA
CTCTTTTTCCTGTAGAAAATGCTTATGCTTTGATACAATTTGAGAAAGAAAGTTTGAGCCGGAAAATTATACATGAATTA
AAATATAAAAACAGAGAAAAAACAGGAAAAATTTTAGCTGATTGGATCACGGAGCGTGTAGATTTCAAAAATGAAAAACC
AGATCTTATCGTCAGCATTCCTCTTCATAAAAAGAAACTTAAAGAACGGGGATACAATCAGTTGCATTTGTTTGCAGAAA
CATTATCTGAATTTTACAACATCCCTTTTGATCATGAAGTGATTTTGAGGAGTTATTATTCGAAAGCTCAGGCTTTGAAA
GATAAAAAACACCGTCTGAGTACAGAAAATCTATTCGCAATCAATAAAAATATTTCAGGAAAACATGTTCTTTTAGTTGA
TGATGTTTTTACAACCGGAAACACAATTGCCACAGCTGCATGGGAAATCCTTAAAACAGGAAATAACAAAGTGAGCGTGC
TGGTAATGGCTATAGATAAGTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (133-210)

• Double zinc ribbon domain (DZR_2) (5-37)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	49.309	98.636	0.486