Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FK728_RS15040 Genome accession   NZ_CP041587
Coordinates   3187745..3188260 (+) Length   171 a.a.
NCBI ID   WP_000477153.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain J9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3182745..3193260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS15025 (FK728_02974) - 3183085..3184545 (+) 1461 WP_000004971.1 amino acid permease -
  FK728_RS15030 (FK728_02975) - 3184822..3186027 (+) 1206 WP_000512701.1 RtcB family protein -
  FK728_RS19005 (FK728_02976) - 3186046..3186189 (+) 144 WP_162138624.1 hypothetical protein -
  FK728_RS15035 (FK728_02977) omp38 3186314..3187363 (-) 1050 WP_000777874.1 outer membrane protein Omp38 -
  FK728_RS15040 (FK728_02978) fimT 3187745..3188260 (+) 516 WP_000477153.1 GspH/FimT family pseudopilin Machinery gene
  FK728_RS15045 (FK728_02979) - 3188369..3189544 (+) 1176 WP_000129968.1 thiolase family protein -
  FK728_RS15050 (FK728_02980) - 3189671..3190114 (+) 444 WP_001176580.1 VOC family protein -
  FK728_RS15055 (FK728_02981) - 3190157..3190510 (-) 354 WP_000457785.1 DMT family transporter -
  FK728_RS15060 (FK728_02982) - 3190593..3191078 (-) 486 WP_000935252.1 DUF934 domain-containing protein -
  FK728_RS15065 (FK728_02983) - 3191071..3192714 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19605.87 Da        Isoelectric Point: 9.1498

>NTDB_id=327047 FK728_RS15040 WP_000477153.1 3187745..3188260(+) (fimT) [Acinetobacter baumannii strain J9]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSNQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=327047 FK728_RS15040 WP_000477153.1 3187745..3188260(+) (fimT) [Acinetobacter baumannii strain J9]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTAATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421