Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FK728_RS08855 Genome accession   NZ_CP041587
Coordinates   1842597..1843193 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain J9     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837597..1848193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS08825 (FK728_01745) - 1837775..1838149 (+) 375 WP_000789457.1 TonB C-terminal domain-containing protein -
  FK728_RS08830 (FK728_01746) - 1838324..1839091 (+) 768 WP_000934168.1 class I SAM-dependent methyltransferase -
  FK728_RS08835 (FK728_01747) - 1839172..1840257 (-) 1086 WP_002064896.1 alpha/beta fold hydrolase -
  FK728_RS08840 (FK728_01748) - 1840391..1841578 (+) 1188 WP_001981349.1 O-succinylhomoserine sulfhydrylase -
  FK728_RS08845 (FK728_01749) - 1841756..1841992 (+) 237 WP_000917296.1 hypothetical protein -
  FK728_RS08850 (FK728_01750) - 1842258..1842587 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  FK728_RS08855 (FK728_01751) recR 1842597..1843193 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  FK728_RS08860 (FK728_01752) - 1843499..1844176 (+) 678 Protein_1714 ribonuclease D -
  FK728_RS08870 (FK728_01755) - 1845456..1845908 (+) 453 Protein_1716 HRDC domain-containing protein -
  FK728_RS08875 (FK728_01756) - 1846410..1846676 (+) 267 WP_000183702.1 hypothetical protein -
  FK728_RS08880 (FK728_01757) - 1846807..1847148 (+) 342 WP_000367442.1 hypothetical protein -
  FK728_RS08885 (FK728_01758) - 1847220..1847384 (-) 165 WP_000086293.1 hypothetical protein -
  FK728_RS08890 (FK728_01759) - 1847872..1848132 (+) 261 WP_188146221.1 YcgL domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=327028 FK728_RS08855 WP_000490551.1 1842597..1843193(+) (recR) [Acinetobacter baumannii strain J9]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=327028 FK728_RS08855 WP_000490551.1 1842597..1843193(+) (recR) [Acinetobacter baumannii strain J9]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGAGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCACGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTGCCACAAGGTGGTGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment