Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FNL98_RS13515 Genome accession   NZ_CP041585
Coordinates   2067428..2067913 (+) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1711654     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062428..2072913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL98_RS12055 (FNL98_12055) - 2062495..2063238 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FNL98_RS12060 (FNL98_12060) - 2063235..2063924 (+) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  FNL98_RS13365 - 2063988..2064179 (-) 192 WP_014580443.1 hypothetical protein -
  FNL98_RS12075 (FNL98_12075) pilE 2064509..2064826 (+) 318 WP_003697861.1 pilin Machinery gene
  FNL98_RS14115 (FNL98_12080) - 2064792..2065478 (+) 687 WP_143824052.1 pilin -
  FNL98_RS12085 (FNL98_12085) - 2066004..2066443 (+) 440 Protein_2090 pilin -
  FNL98_RS12090 (FNL98_12090) - 2066575..2066971 (+) 397 Protein_2091 pilin -
  FNL98_RS12095 (FNL98_12095) - 2067024..2067371 (+) 348 Protein_2092 pilin -
  FNL98_RS13515 (FNL98_12100) pilE 2067428..2067913 (+) 486 WP_125121586.1 pilin Machinery gene
  FNL98_RS12110 (FNL98_12110) - 2068045..2068430 (+) 386 Protein_2094 pilin -
  FNL98_RS12120 (FNL98_12120) lpxC 2068924..2069847 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  FNL98_RS13990 - 2069989..2070375 (+) 387 Protein_2096 pilin -
  FNL98_RS13385 - 2070415..2070756 (+) 342 Protein_2097 pilin -
  FNL98_RS14120 - 2070894..2070997 (+) 104 Protein_2098 pilin -
  FNL98_RS13995 (FNL98_12145) - 2071812..2072320 (+) 509 Protein_2099 pilin -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=326992 FNL98_RS13515 WP_125121586.1 2067428..2067913(+) (pilE) [Neisseria gonorrhoeae strain NJ1711654]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=326992 FNL98_RS13515 WP_125121586.1 2067428..2067913(+) (pilE) [Neisseria gonorrhoeae strain NJ1711654]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453

Multiple sequence alignment