Detailed information NTG0326955

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: EHF39_RS01415
• Genome accession: NZ_CP033908
• Coordinates: 260864..261790 (+)
• Length: 308 a.a.
• NCBI ID: WP_002986004.1
• Uniprot ID: Q1JNF8
• Organism: Streptococcus pyogenes strain RLGH
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 255864..266790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHF39_RS01405 (EHF39_01405)	amiA	257318..259297 (+)	1980	WP_021299351.1	peptide ABC transporter substrate-binding protein	Regulator
EHF39_RS01410 (EHF39_01410)	amiC	259362..260864 (+)	1503	WP_011017334.1	ABC transporter permease	Regulator
EHF39_RS01415 (EHF39_01415)	amiD	260864..261790 (+)	927	WP_002986004.1	oligopeptide ABC transporter permease OppC	Regulator
EHF39_RS01420 (EHF39_01420)	amiE	261799..262869 (+)	1071	WP_010921893.1	ABC transporter ATP-binding protein	Regulator
EHF39_RS01425 (EHF39_01425)	amiF	262862..263785 (+)	924	WP_002986000.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34862.81 Da
• Isoelectric Point: 8.5670

>NTDB_id=326955 EHF39_RS01415 WP_002986004.1 260864..261790(+) (amiD) [Streptococcus pyogenes strain RLGH]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide

• Length: 927 bp

>NTDB_id=326955 EHF39_RS01415 WP_002986004.1 260864..261790(+) (amiD) [Streptococcus pyogenes strain RLGH]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTGCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-72)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-305)

3D structure

• AlphaFold DB: Q1JNF8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus salivarius strain HSISS4	73.701	100	0.737
amiD	Streptococcus thermophilus LMG 18311	73.052	100	0.731
amiD	Streptococcus thermophilus LMD-9	73.052	100	0.731