Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FNK00_RS06380 Genome accession   NZ_CP041584
Coordinates   1228536..1229030 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH003     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223536..1234030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNK00_RS06365 (FNK00_06365) - 1224922..1226100 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  FNK00_RS06370 (FNK00_06370) gpsA 1226110..1227006 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FNK00_RS06375 (FNK00_06375) gatB 1227003..1228421 (-) 1419 WP_052778493.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FNK00_RS06380 (FNK00_06380) luxS 1228536..1229030 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  FNK00_RS06390 (FNK00_06390) - 1229343..1230335 (+) 993 WP_002869635.1 isopenicillin N synthase family oxygenase -
  FNK00_RS06395 (FNK00_06395) - 1230346..1231116 (+) 771 WP_002898512.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  FNK00_RS06400 (FNK00_06400) metE 1231128..1233392 (+) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=326902 FNK00_RS06380 WP_002859279.1 1228536..1229030(+) (luxS) [Campylobacter jejuni strain YH003]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=326902 FNK00_RS06380 WP_002859279.1 1228536..1229030(+) (luxS) [Campylobacter jejuni strain YH003]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGCGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment