Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FNK00_RS03065 Genome accession   NZ_CP041584
Coordinates   583386..583769 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain YH003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 578386..588769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNK00_RS03045 (FNK00_03045) - 578465..580399 (-) 1935 WP_052823172.1 ribonuclease R family protein -
  FNK00_RS03050 (FNK00_03050) ilvC 580518..581540 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  FNK00_RS03055 (FNK00_03055) - 581544..582626 (+) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  FNK00_RS03060 (FNK00_03060) dprA 582616..583389 (+) 774 WP_002875504.1 DNA-processing protein DprA Machinery gene
  FNK00_RS03065 (FNK00_03065) dprB 583386..583769 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  FNK00_RS03070 (FNK00_03070) - 583798..584637 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FNK00_RS03075 (FNK00_03075) msrA 584813..585296 (-) 484 Protein_589 peptide-methionine (S)-S-oxide reductase MsrA -
  FNK00_RS03080 (FNK00_03080) ppa 585338..585856 (-) 519 WP_002852138.1 inorganic diphosphatase -
  FNK00_RS03085 (FNK00_03085) adk 585866..586444 (-) 579 WP_032590860.1 adenylate kinase -
  FNK00_RS03090 (FNK00_03090) aspS 586441..588192 (-) 1752 WP_143298497.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=326887 FNK00_RS03065 WP_002852281.1 583386..583769(+) (dprB) [Campylobacter jejuni strain YH003]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=326887 FNK00_RS03065 WP_002852281.1 583386..583769(+) (dprB) [Campylobacter jejuni strain YH003]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TTATTGTAGGCATTCCTAAGGGCGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449