Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNP78_RS09505 Genome accession   NZ_CP041452
Coordinates   1847194..1848621 (-) Length   475 a.a.
NCBI ID   WP_074400803.1    Uniprot ID   -
Organism   Escherichia coli strain YPE3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842194..1853621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNP78_RS09475 (FNP78_09475) yeeZ 1842249..1843073 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FNP78_RS09480 (FNP78_09480) yeeY 1843119..1844048 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FNP78_RS09485 (FNP78_09485) yoeI 1844263..1844325 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNP78_RS09490 (FNP78_09490) plaP 1844315..1845673 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNP78_RS09495 (FNP78_09495) tsuA 1845852..1846910 (+) 1059 WP_064670362.1 thiosulfate utilization transporter TsuA/YeeE -
  FNP78_RS09500 (FNP78_09500) tsuB 1846924..1847151 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNP78_RS09505 (FNP78_09505) sbcB 1847194..1848621 (-) 1428 WP_074400803.1 exodeoxyribonuclease I Machinery gene
  FNP78_RS09510 (FNP78_09510) dacD 1848830..1849996 (+) 1167 WP_016247321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNP78_RS09515 (FNP78_09515) sbmC 1850115..1850588 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  FNP78_RS09520 (FNP78_09520) yeeA 1850786..1851844 (+) 1059 WP_064670363.1 FUSC family protein -
  FNP78_RS09525 (FNP78_09525) tmaR 1852016..1852345 (+) 330 WP_000450409.1 DUF496 family protein -
  FNP78_RS09530 (FNP78_09530) - 1852446..1852628 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FNP78_RS09535 (FNP78_09535) - 1852700..1852828 (+) 129 Protein_1745 transposase domain-containing protein -
  FNP78_RS09540 (FNP78_09540) - 1853117..1853197 (-) 81 Protein_1746 hypothetical protein -
  FNP78_RS09545 (FNP78_09545) yeeW 1853243..1853437 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54501.86 Da        Isoelectric Point: 5.6070

>NTDB_id=326831 FNP78_RS09505 WP_074400803.1 1847194..1848621(-) (sbcB) [Escherichia coli strain YPE3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=326831 FNP78_RS09505 WP_074400803.1 1847194..1848621(-) (sbcB) [Escherichia coli strain YPE3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581