Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EGM96_RS12885 | Genome accession | NZ_CP033876 |
| Coordinates | 2690701..2691081 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain WU_164 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2685701..2696081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM96_RS12855 (EGM96_12865) | tadA | 2685820..2686323 (-) | 504 | WP_031960449.1 | tRNA adenosine(34) deaminase TadA | - |
| EGM96_RS12860 (EGM96_12870) | - | 2686330..2687454 (-) | 1125 | WP_109067466.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EGM96_RS12865 (EGM96_12875) | ung | 2687451..2688164 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EGM96_RS12870 (EGM96_12880) | - | 2688215..2688811 (-) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EGM96_RS12875 (EGM96_12885) | gspK | 2689041..2690000 (-) | 960 | WP_031960447.1 | type II secretion system minor pseudopilin GspK | - |
| EGM96_RS12880 (EGM96_12890) | xcpW | 2690000..2690701 (-) | 702 | WP_000594580.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EGM96_RS12885 (EGM96_12895) | xcpV | 2690701..2691081 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EGM96_RS12890 (EGM96_12900) | - | 2691071..2691625 (-) | 555 | WP_000841367.1 | type II secretion system protein | - |
| EGM96_RS12895 (EGM96_12905) | - | 2691635..2692243 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EGM96_RS12900 (EGM96_12910) | - | 2692281..2693054 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| EGM96_RS12905 (EGM96_12915) | - | 2693072..2693413 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| EGM96_RS12910 (EGM96_12920) | - | 2693425..2694405 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| EGM96_RS12915 (EGM96_12925) | kdsB | 2694417..2695178 (-) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=326727 EGM96_RS12885 WP_000836911.1 2690701..2691081(-) (xcpV) [Acinetobacter baumannii strain WU_164]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=326727 EGM96_RS12885 WP_000836911.1 2690701..2691081(-) (xcpV) [Acinetobacter baumannii strain WU_164]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |