Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   HMPREF0837_RS04235 Genome accession   NC_014251
Coordinates   799351..799617 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TCH8431/19A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 794351..804617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0837_RS04210 (HMPREF0837_10873) - 794615..795124 (+) 510 WP_000619939.1 N-acetyltransferase -
  HMPREF0837_RS04215 (HMPREF0837_10874) pheT 795201..797606 (+) 2406 WP_000961570.1 phenylalanine--tRNA ligase subunit beta -
  HMPREF0837_RS04220 (HMPREF0837_10875) - 797674..798675 (-) 1002 WP_000597984.1 endonuclease/exonuclease/phosphatase family protein -
  HMPREF0837_RS11575 - 798822..799225 (+) 404 Protein_806 helix-turn-helix domain-containing protein -
  HMPREF0837_RS04235 (HMPREF0837_10877) HI0659 799351..799617 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  HMPREF0837_RS04240 (HMPREF0837_10878) metE 799878..802127 (+) 2250 WP_000108216.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  HMPREF0837_RS04245 (HMPREF0837_10879) metF 802191..803057 (+) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=32670 HMPREF0837_RS04235 WP_001814186.1 799351..799617(+) (HI0659) [Streptococcus pneumoniae TCH8431/19A]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=32670 HMPREF0837_RS04235 WP_001814186.1 799351..799617(+) (HI0659) [Streptococcus pneumoniae TCH8431/19A]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment