Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FNP80_RS20665 | Genome accession | NZ_CP041442 |
| Coordinates | 3879574..3880014 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain YPE12 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3874574..3885014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNP80_RS20645 (FNP80_20645) | aroP | 3875572..3876945 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| FNP80_RS20650 (FNP80_20650) | ampE | 3876988..3877842 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| FNP80_RS20655 (FNP80_20655) | ampD | 3877839..3878390 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FNP80_RS20660 (FNP80_20660) | nadC | 3878478..3879371 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FNP80_RS20665 (FNP80_20665) | pilA | 3879574..3880014 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| FNP80_RS20670 (FNP80_20670) | pilB | 3880024..3881409 (+) | 1386 | WP_021570596.1 | type II secretion system protein GspE | Machinery gene |
| FNP80_RS20675 (FNP80_20675) | hofC | 3881399..3882601 (+) | 1203 | WP_000157266.1 | protein transport protein HofC | - |
| FNP80_RS20680 (FNP80_20680) | guaC | 3882636..3883679 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| FNP80_RS25485 | - | 3883835..3883879 (-) | 45 | WP_120795372.1 | protein YacM | - |
| FNP80_RS20685 (FNP80_20685) | coaE | 3883904..3884524 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=326699 FNP80_RS20665 WP_000360904.1 3879574..3880014(+) (pilA) [Escherichia coli strain YPE12]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=326699 FNP80_RS20665 WP_000360904.1 3879574..3880014(+) (pilA) [Escherichia coli strain YPE12]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |