Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   EG365_RS06575 Genome accession   NZ_CP033866
Coordinates   1352960..1353601 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter sp. FDAARGOS_494     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347960..1358601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG365_RS06555 (EG365_06560) aroK 1348876..1349445 (-) 570 WP_000643712.1 shikimate kinase AroK -
  EG365_RS06560 (EG365_06565) pilQ 1349457..1351622 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  EG365_RS06565 (EG365_06570) pilP 1351685..1352212 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  EG365_RS06570 (EG365_06575) pilO 1352223..1352963 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  EG365_RS06575 (EG365_06580) pilN 1352960..1353601 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  EG365_RS06580 (EG365_06585) pilM 1353601..1354659 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  EG365_RS06585 (EG365_06590) ponA 1354821..1357376 (+) 2556 WP_000736667.1 penicillin-binding protein PBP1a -
  EG365_RS06590 (EG365_06595) - 1357394..1358218 (-) 825 WP_002022249.1 putative RNA methyltransferase -
  EG365_RS06595 (EG365_06600) - 1358221..1358553 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=326604 EG365_RS06575 WP_000201227.1 1352960..1353601(-) (pilN) [Acinetobacter sp. FDAARGOS_494]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=326604 EG365_RS06575 WP_000201227.1 1352960..1353601(-) (pilN) [Acinetobacter sp. FDAARGOS_494]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTCCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment