Detailed information NTG0326584

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE80_RS05340
• Genome accession: NZ_CP041437
• Coordinates: 1115501..1116493 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1110501..1121493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE80_RS05310 (FNE80_05440)	ispD	1110562..1111272 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE80_RS05315 (FNE80_05445)	ispF	1111272..1111751 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE80_RS05320 (FNE80_05450)	truD	1111748..1112797 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
FNE80_RS05325 (FNE80_05455)	surE	1112778..1113539 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
FNE80_RS05330 (FNE80_05460)	pcm	1113533..1114159 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE80_RS05335 (FNE80_05465)	nlpD	1114344..1115438 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FNE80_RS05340 (FNE80_05470)	rpoS	1115501..1116493 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE80_RS05345 (FNE80_05475)	-	1116614..1117021 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
FNE80_RS05350 (FNE80_05480)	-	1117168..1117761 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE80_RS05355 (FNE80_05485)	-	1117761..1119188 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE80_RS05360 (FNE80_05490)	-	1119199..1119435 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE80_RS05365 (FNE80_05495)	ygbN	1119474..1120838 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326584 FNE80_RS05340 WP_000081550.1 1115501..1116493(+) (rpoS) [Escherichia coli strain STEC005]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326584 FNE80_RS05340 WP_000081550.1 1115501..1116493(+) (rpoS) [Escherichia coli strain STEC005]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715