Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HMPREF0837_RS02360 Genome accession   NC_014251
Coordinates   435246..435839 (+) Length   197 a.a.
NCBI ID   WP_000271492.1    Uniprot ID   C1CP48
Organism   Streptococcus pneumoniae TCH8431/19A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430246..440839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0837_RS02340 (HMPREF0837_10475) ribE 431428..431895 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  HMPREF0837_RS02345 (HMPREF0837_10476) - 431896..433101 (-) 1206 WP_001814751.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  HMPREF0837_RS02350 (HMPREF0837_10477) ribE 433121..433756 (-) 636 WP_000493846.1 riboflavin synthase -
  HMPREF0837_RS02355 (HMPREF0837_10478) ribD 433741..434841 (-) 1101 WP_001284108.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  HMPREF0837_RS02360 (HMPREF0837_10479) ruvA 435246..435839 (+) 594 WP_000271492.1 Holliday junction branch migration protein RuvA Machinery gene
  HMPREF0837_RS02365 (HMPREF0837_10480) - 435849..436412 (+) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  HMPREF0837_RS02370 (HMPREF0837_10481) - 436409..437086 (+) 678 WP_000987422.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF0837_RS02375 (HMPREF0837_10482) - 437223..438254 (-) 1032 WP_000255096.1 S66 peptidase family protein -
  HMPREF0837_RS02380 (HMPREF0837_10483) - 438509..439192 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  HMPREF0837_RS02385 (HMPREF0837_10484) - 439204..440148 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21664.13 Da        Isoelectric Point: 6.2561

>NTDB_id=32656 HMPREF0837_RS02360 WP_000271492.1 435246..435839(+) (ruvA) [Streptococcus pneumoniae TCH8431/19A]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEDQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=32656 HMPREF0837_RS02360 WP_000271492.1 435246..435839(+) (ruvA) [Streptococcus pneumoniae TCH8431/19A]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGATCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CP48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

98.985

100

0.99
  ruvA Streptococcus pneumoniae R6

98.477

100

0.985
  ruvA Streptococcus pneumoniae D39

98.477

100

0.985
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.32

100

0.411

Multiple sequence alignment