Detailed information NTG0326506

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE81_RS05260
• Genome accession: NZ_CP041435
• Coordinates: 1109513..1110505 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC309
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1104513..1115505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE81_RS05230 (FNE81_05370)	ispD	1104574..1105284 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE81_RS05235 (FNE81_05375)	ispF	1105284..1105763 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE81_RS05240 (FNE81_05380)	truD	1105760..1106809 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FNE81_RS05245 (FNE81_05385)	surE	1106790..1107551 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNE81_RS05250 (FNE81_05390)	pcm	1107545..1108171 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE81_RS05255 (FNE81_05395)	nlpD	1108356..1109450 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FNE81_RS05260 (FNE81_05400)	rpoS	1109513..1110505 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE81_RS05265 (FNE81_05405)	-	1110626..1111033 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
FNE81_RS05270 (FNE81_05410)	-	1111180..1111773 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE81_RS05275 (FNE81_05415)	-	1111773..1113200 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE81_RS05280 (FNE81_05420)	-	1113211..1113447 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE81_RS05285 (FNE81_05425)	ygbN	1113486..1114850 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326506 FNE81_RS05260 WP_000081550.1 1109513..1110505(+) (rpoS) [Escherichia coli strain STEC309]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326506 FNE81_RS05260 WP_000081550.1 1109513..1110505(+) (rpoS) [Escherichia coli strain STEC309]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715