Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   EGY13_RS03845 Genome accession   NZ_CP033858
Coordinates   680648..681532 (+) Length   294 a.a.
NCBI ID   WP_000914777.1    Uniprot ID   -
Organism   Acinetobacter sp. FDAARGOS_493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 675648..686532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY13_RS03820 (EGY13_03820) - 676046..677293 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  EGY13_RS03825 (EGY13_03825) wrbA 677581..678174 (+) 594 WP_001183359.1 NAD(P)H:quinone oxidoreductase -
  EGY13_RS03830 (EGY13_03830) - 678227..678802 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  EGY13_RS03835 (EGY13_03835) - 678875..679588 (-) 714 WP_000201545.1 DUF3108 domain-containing protein -
  EGY13_RS03840 (EGY13_03840) - 679746..680417 (-) 672 WP_001193957.1 hypothetical protein -
  EGY13_RS03845 (EGY13_03845) tonB2 680648..681532 (+) 885 WP_000914777.1 energy transducer TonB Machinery gene
  EGY13_RS03850 (EGY13_03850) ybeY 681622..682098 (-) 477 WP_000703568.1 rRNA maturation RNase YbeY -
  EGY13_RS03855 (EGY13_03855) - 682108..683196 (-) 1089 WP_000122983.1 PhoH family protein -
  EGY13_RS03860 (EGY13_03860) miaB 683234..684685 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33712.62 Da        Isoelectric Point: 9.0935

>NTDB_id=326455 EGY13_RS03845 WP_000914777.1 680648..681532(+) (tonB2) [Acinetobacter sp. FDAARGOS_493]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPMPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAETEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=326455 EGY13_RS03845 WP_000914777.1 680648..681532(+) (tonB2) [Acinetobacter sp. FDAARGOS_493]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAATGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAACTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment