Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNE82_RS09160 Genome accession   NZ_CP041433
Coordinates   1910095..1911522 (-) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain STEC313     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1905095..1916522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE82_RS09130 (FNE82_09255) yeeZ 1905150..1905974 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FNE82_RS09135 (FNE82_09260) yeeY 1906020..1906949 (+) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  FNE82_RS09140 (FNE82_09265) yoeI 1907164..1907226 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNE82_RS09145 (FNE82_09270) plaP 1907216..1908574 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNE82_RS09150 (FNE82_09275) tsuA 1908753..1909811 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  FNE82_RS09155 (FNE82_09280) tsuB 1909825..1910052 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNE82_RS09160 (FNE82_09285) sbcB 1910095..1911522 (-) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  FNE82_RS09165 (FNE82_09290) dacD 1911731..1912897 (+) 1167 WP_000830142.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNE82_RS09170 (FNE82_09295) sbmC 1913015..1913488 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  FNE82_RS09175 (FNE82_09300) yeeA 1913686..1914744 (+) 1059 WP_001200892.1 FUSC family protein -
  FNE82_RS09180 (FNE82_09305) tmaR 1914916..1915245 (+) 330 WP_000450409.1 DUF496 family protein -
  FNE82_RS25715 - 1915346..1915711 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  FNE82_RS25535 - 1915982..1916353 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=326438 FNE82_RS09160 WP_000980546.1 1910095..1911522(-) (sbcB) [Escherichia coli strain STEC313]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=326438 FNE82_RS09160 WP_000980546.1 1910095..1911522(-) (sbcB) [Escherichia coli strain STEC313]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCGG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGTTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579