Detailed information NTG0326426

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE82_RS05410
• Genome accession: NZ_CP041433
• Coordinates: 1128805..1129797 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC313
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1123805..1134797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE82_RS05380 (FNE82_05485)	ispD	1123866..1124576 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE82_RS05385 (FNE82_05490)	ispF	1124576..1125055 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE82_RS05390 (FNE82_05495)	truD	1125052..1126101 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FNE82_RS05395 (FNE82_05500)	surE	1126082..1126843 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNE82_RS05400 (FNE82_05505)	pcm	1126837..1127463 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE82_RS05405 (FNE82_05510)	nlpD	1127648..1128742 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNE82_RS05410 (FNE82_05515)	rpoS	1128805..1129797 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE82_RS05415 (FNE82_05520)	-	1129918..1130325 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
FNE82_RS05420 (FNE82_05525)	-	1130472..1131065 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE82_RS05425 (FNE82_05530)	-	1131065..1132492 (+)	1428	Protein_1079	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE82_RS05430 (FNE82_05535)	-	1132503..1132739 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE82_RS05435 (FNE82_05540)	ygbN	1132778..1134142 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326426 FNE82_RS05410 WP_000081550.1 1128805..1129797(+) (rpoS) [Escherichia coli strain STEC313]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326426 FNE82_RS05410 WP_000081550.1 1128805..1129797(+) (rpoS) [Escherichia coli strain STEC313]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715