Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HORE_RS00545 Genome accession   NC_011899
Coordinates   106731..108086 (+) Length   451 a.a.
NCBI ID   WP_012635048.1    Uniprot ID   B8D095
Organism   Halothermothrix orenii H 168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101731..113086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HORE_RS00525 (Hore_00840) - 102182..102655 (+) 474 WP_012635044.1 CtsR family transcriptional regulator -
  HORE_RS00530 (Hore_00850) - 102658..103170 (+) 513 WP_012635045.1 UvrB/UvrC motif-containing protein -
  HORE_RS00535 (Hore_00860) - 103173..104222 (+) 1050 WP_012635046.1 protein arginine kinase -
  HORE_RS00540 (Hore_00870) - 104235..106655 (+) 2421 WP_012635047.1 ATP-dependent Clp protease ATP-binding subunit -
  HORE_RS00545 (Hore_00880) radA 106731..108086 (+) 1356 WP_012635048.1 DNA repair protein RadA Machinery gene
  HORE_RS00550 (Hore_00890) disA 108091..109170 (+) 1080 WP_012635049.1 DNA integrity scanning diadenylate cyclase DisA -
  HORE_RS00555 (Hore_00900) - 109328..109828 (+) 501 WP_041606184.1 CarD family transcriptional regulator -
  HORE_RS00560 (Hore_00910) - 109934..111028 (+) 1095 WP_012635051.1 PIN/TRAM domain-containing protein -
  HORE_RS00565 (Hore_00920) ispD 111039..111728 (+) 690 WP_012635052.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HORE_RS00570 (Hore_00930) ispF 111733..112230 (+) 498 WP_012635053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HORE_RS00575 (Hore_00940) - 112238..113008 (+) 771 WP_226984170.1 HutP family protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49371.11 Da        Isoelectric Point: 6.6481

>NTDB_id=32638 HORE_RS00545 WP_012635048.1 106731..108086(+) (radA) [Halothermothrix orenii H 168]
MPRPKTYYICSECGYKSAKWMGRCLNCGAWNTFQELDEEAIEEKVDIKVTPSSITDIKAGACPRLSSGIGEFDRVLGGGV
VPGSLILLGGAPGIGKSTLVLQMARHFSEKYGKVLYVSGEESASQLKMRAGRLGAINEDLYVLSETNFQQIYGVIQNEKY
ELIIIDSIQTIFDPRIESTPGSISQVKEVTNRLLIQAKKLEVPIVLIGHVTKEGHLAGPRVLEHLVDTVLQFEGDRNYIY
RILRAVKNRFGSTNEIGVFEMMGSGMREVVNPSEIFLKGRAQGVSGSVIVPVVEGSRPLLVEVQALVTYSSFGTPQRLTT
GVDRKRVSILLAVLEKKAGINFHNQDVNINITGGLKVEEPALDLGIITAILSSCKDQEVAPDLAVIGEVGLAGEIRAVSQ
IERRLSELKKMGFKEVVIPGGNISGLDFDPDINIVEVKNVNDLMKILFNRR

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=32638 HORE_RS00545 WP_012635048.1 106731..108086(+) (radA) [Halothermothrix orenii H 168]
ATGCCCAGACCTAAAACCTATTATATCTGCAGTGAATGTGGTTATAAATCTGCTAAATGGATGGGACGTTGTCTAAACTG
TGGTGCCTGGAATACTTTTCAGGAACTGGATGAAGAAGCCATTGAGGAAAAGGTGGATATCAAGGTTACCCCTAGTTCAA
TAACTGATATAAAAGCCGGGGCCTGTCCCCGGCTTTCTTCCGGTATTGGGGAGTTTGACAGGGTGCTTGGTGGAGGTGTT
GTGCCCGGTTCTTTAATTCTACTTGGAGGTGCCCCTGGAATAGGTAAATCGACCCTGGTTCTTCAAATGGCCAGGCACTT
CAGCGAAAAATATGGAAAAGTTTTATATGTCAGTGGTGAAGAATCAGCTTCCCAGTTAAAAATGAGGGCCGGGAGGCTCG
GGGCTATAAATGAGGATTTATATGTTCTTTCTGAAACTAATTTTCAACAAATTTATGGTGTTATACAAAATGAAAAATAT
GAATTAATAATAATAGATTCTATACAAACAATATTTGACCCCCGGATTGAATCTACCCCCGGTAGTATAAGCCAGGTTAA
GGAAGTTACTAATAGGTTACTTATTCAGGCCAAGAAACTGGAAGTTCCCATCGTTTTAATAGGACATGTTACCAAGGAAG
GACATCTGGCCGGTCCCCGGGTCCTGGAACATTTGGTTGATACAGTTCTTCAGTTTGAAGGGGACAGGAATTACATCTAT
CGAATTCTCAGGGCAGTAAAAAATCGTTTTGGCTCTACAAATGAGATAGGTGTCTTTGAAATGATGGGAAGTGGTATGAG
AGAAGTGGTTAATCCCTCGGAAATTTTCCTTAAAGGGAGGGCCCAGGGGGTATCGGGTTCTGTGATAGTTCCGGTTGTCG
AGGGGAGTAGACCCCTTCTTGTTGAGGTTCAGGCCCTGGTAACCTACTCGAGTTTTGGGACCCCCCAGCGGTTAACAACC
GGTGTTGACCGGAAGAGGGTTTCTATTTTACTGGCTGTCCTGGAGAAAAAGGCTGGTATTAATTTTCATAATCAGGATGT
TAATATTAATATAACAGGGGGCTTAAAAGTAGAAGAGCCGGCCCTGGATCTCGGTATAATAACAGCTATTTTATCAAGTT
GTAAAGACCAGGAGGTAGCTCCGGACCTGGCTGTGATTGGAGAAGTAGGACTGGCCGGGGAGATACGGGCTGTCAGTCAG
ATAGAGAGGCGTTTAAGTGAATTAAAAAAGATGGGCTTTAAGGAAGTTGTTATTCCTGGAGGCAATATATCTGGTCTGGA
CTTTGACCCGGATATTAATATAGTTGAAGTTAAAAATGTTAATGATCTCATGAAGATATTGTTTAACAGGAGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-422)

AAA domain (AAA_25)

(77-214)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8D095

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.993

100

0.512
  radA Streptococcus pneumoniae Rx1

49.007

100

0.492
  radA Streptococcus pneumoniae D39

49.007

100

0.492
  radA Streptococcus pneumoniae R6

49.007

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.007

100

0.492
  radA Streptococcus mitis NCTC 12261

49.007

100

0.492
  radA Streptococcus mitis SK321

49.007

100

0.492

Multiple sequence alignment