Detailed information NTG0326342

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE83_RS05635
• Genome accession: NZ_CP041431
• Coordinates: 1165840..1166832 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC316
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1160840..1171832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE83_RS05605 (FNE83_05750)	ispD	1160901..1161611 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE83_RS05610 (FNE83_05755)	ispF	1161611..1162090 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE83_RS05615 (FNE83_05760)	truD	1162087..1163136 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FNE83_RS05620 (FNE83_05765)	surE	1163117..1163878 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNE83_RS05625 (FNE83_05770)	pcm	1163872..1164498 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE83_RS05630 (FNE83_05775)	nlpD	1164683..1165777 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNE83_RS05635 (FNE83_05780)	rpoS	1165840..1166832 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE83_RS05640 (FNE83_05785)	-	1166953..1167360 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
FNE83_RS05645 (FNE83_05790)	-	1167507..1168100 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE83_RS05650 (FNE83_05795)	-	1168100..1169527 (+)	1428	Protein_1126	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE83_RS05655 (FNE83_05800)	-	1169538..1169774 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE83_RS05660 (FNE83_05805)	ygbN	1169813..1171177 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326342 FNE83_RS05635 WP_000081550.1 1165840..1166832(+) (rpoS) [Escherichia coli strain STEC316]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326342 FNE83_RS05635 WP_000081550.1 1165840..1166832(+) (rpoS) [Escherichia coli strain STEC316]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715