Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | EGX90_RS00830 | Genome accession | NZ_CP033836 |
| Coordinates | 184010..184711 (+) | Length | 233 a.a. |
| NCBI ID | WP_004114219.1 | Uniprot ID | - |
| Organism | Gardnerella vaginalis strain FDAARGOS_568 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 143381..184711 | 184010..184711 | within | 0 |
Gene organization within MGE regions
Location: 143381..184711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX90_RS00635 (EGX90_00635) | - | 143381..145813 (+) | 2433 | WP_075038430.1 | acyltransferase family protein | - |
| EGX90_RS00640 (EGX90_00640) | zwf | 145910..147490 (+) | 1581 | WP_004138752.1 | glucose-6-phosphate dehydrogenase | - |
| EGX90_RS00645 (EGX90_00645) | - | 147487..148440 (+) | 954 | WP_004114280.1 | glucose-6-phosphate dehydrogenase assembly protein OpcA | - |
| EGX90_RS00650 (EGX90_00650) | pgl | 148474..149295 (+) | 822 | WP_004114279.1 | 6-phosphogluconolactonase | - |
| EGX90_RS00655 (EGX90_00655) | gndA | 149543..150997 (-) | 1455 | WP_004114276.1 | NADP-dependent phosphogluconate dehydrogenase | - |
| EGX90_RS00660 (EGX90_00660) | - | 151430..151690 (+) | 261 | WP_004124343.1 | glutaredoxin family protein | - |
| EGX90_RS00665 (EGX90_00665) | nrdI | 151736..152237 (+) | 502 | Protein_115 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| EGX90_RS00670 (EGX90_00670) | nrdE | 152319..154541 (+) | 2223 | WP_075038431.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| EGX90_RS00675 (EGX90_00675) | nrdF | 154624..155718 (+) | 1095 | WP_075038432.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| EGX90_RS00680 (EGX90_00680) | - | 155896..156183 (-) | 288 | WP_009994045.1 | addiction module antidote protein | - |
| EGX90_RS00690 (EGX90_00690) | - | 156405..156674 (+) | 270 | WP_004114266.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| EGX90_RS00695 (EGX90_00695) | - | 156961..158412 (+) | 1452 | WP_004114264.1 | ATP-binding protein | - |
| EGX90_RS00700 (EGX90_00700) | - | 158698..158991 (+) | 294 | WP_004116156.1 | DUF2089 family protein | - |
| EGX90_RS00705 (EGX90_00705) | - | 158988..159161 (+) | 174 | WP_004110365.1 | hypothetical protein | - |
| EGX90_RS00710 (EGX90_00710) | - | 159381..160553 (-) | 1173 | WP_032836423.1 | exodeoxyribonuclease V | - |
| EGX90_RS00715 (EGX90_00715) | - | 160588..161241 (-) | 654 | WP_004138592.1 | response regulator transcription factor | - |
| EGX90_RS00720 (EGX90_00720) | - | 161276..161737 (-) | 462 | WP_004114257.1 | hypothetical protein | - |
| EGX90_RS00725 (EGX90_00725) | - | 162009..163232 (-) | 1224 | WP_075038433.1 | histidine kinase | - |
| EGX90_RS00730 (EGX90_00730) | - | 163226..163966 (-) | 741 | WP_075038434.1 | response regulator transcription factor | - |
| EGX90_RS00740 (EGX90_00740) | - | 164160..164663 (+) | 504 | WP_075038436.1 | hypothetical protein | - |
| EGX90_RS00745 (EGX90_00745) | - | 164693..165037 (-) | 345 | WP_075038437.1 | hypothetical protein | - |
| EGX90_RS00750 (EGX90_00750) | - | 165297..165533 (+) | 237 | WP_180372286.1 | hypothetical protein | - |
| EGX90_RS00755 (EGX90_00755) | - | 165546..166169 (-) | 624 | WP_004114241.1 | FMN-binding protein | - |
| EGX90_RS00760 (EGX90_00760) | - | 166225..167070 (-) | 846 | WP_075038439.1 | ABC transporter ATP-binding protein | - |
| EGX90_RS00765 (EGX90_00765) | - | 167123..168436 (-) | 1314 | WP_075038440.1 | ABC transporter permease | - |
| EGX90_RS00770 (EGX90_00770) | - | 168426..169796 (-) | 1371 | WP_032836421.1 | ABC transporter permease | - |
| EGX90_RS00775 (EGX90_00775) | - | 169809..171080 (-) | 1272 | WP_004138702.1 | DUF2318 domain-containing protein | - |
| EGX90_RS00780 (EGX90_00780) | - | 171180..171812 (-) | 633 | WP_004116196.1 | iron transporter | - |
| EGX90_RS00785 (EGX90_00785) | - | 171885..173621 (-) | 1737 | WP_004116200.1 | FTR1 family protein | - |
| EGX90_RS00790 (EGX90_00790) | - | 173869..177168 (-) | 3300 | WP_075038441.1 | type I restriction endonuclease subunit R | - |
| EGX90_RS00795 (EGX90_00795) | - | 177227..178180 (-) | 954 | WP_075038442.1 | Abi family protein | - |
| EGX90_RS00800 (EGX90_00800) | - | 178292..179548 (-) | 1257 | WP_075038443.1 | restriction endonuclease subunit S | - |
| EGX90_RS00805 (EGX90_00805) | - | 179545..181149 (-) | 1605 | WP_075038444.1 | type I restriction-modification system subunit M | - |
| EGX90_RS00815 (EGX90_00815) | - | 181606..182370 (-) | 765 | WP_004114222.1 | ABC transporter permease | - |
| EGX90_RS00820 (EGX90_00820) | - | 182384..183109 (-) | 726 | WP_004138748.1 | ABC transporter permease | - |
| EGX90_RS00825 (EGX90_00825) | - | 183106..183870 (-) | 765 | WP_004138603.1 | ABC transporter ATP-binding protein | - |
| EGX90_RS00830 (EGX90_00830) | scnR | 184010..184711 (+) | 702 | WP_004114219.1 | response regulator transcription factor | Regulator |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26467.58 Da Isoelectric Point: 4.8946
>NTDB_id=326328 EGX90_RS00830 WP_004114219.1 184010..184711(+) (scnR) [Gardnerella vaginalis strain FDAARGOS_568]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE
Nucleotide
Download Length: 702 bp
>NTDB_id=326328 EGX90_RS00830 WP_004114219.1 184010..184711(+) (scnR) [Gardnerella vaginalis strain FDAARGOS_568]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
52.466 |
95.708 |
0.502 |