Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FNE84_RS14950 Genome accession   NZ_CP041429
Coordinates   3092678..3093283 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain STEC367     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3087678..3098283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE84_RS25940 - 3088232..3088330 (+) 99 Protein_2957 hypothetical protein -
  FNE84_RS14920 (FNE84_15210) rsmS 3088383..3088544 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FNE84_RS14925 (FNE84_15215) priC 3088558..3089085 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  FNE84_RS14930 (FNE84_15220) ybaN 3089155..3089532 (+) 378 WP_001188905.1 DUF454 family protein -
  FNE84_RS14935 (FNE84_15225) apt 3089685..3090236 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FNE84_RS14940 (FNE84_15230) dnaX 3090365..3092296 (+) 1932 WP_000122018.1 DNA polymerase III subunit gamma/tau -
  FNE84_RS14945 (FNE84_15235) ybaB 3092349..3092678 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FNE84_RS14950 (FNE84_15240) recR 3092678..3093283 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FNE84_RS14955 (FNE84_15245) htpG 3093393..3095267 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  FNE84_RS14960 (FNE84_15250) adk 3095448..3096092 (+) 645 WP_001220233.1 adenylate kinase -
  FNE84_RS14965 (FNE84_15260) hemH 3096328..3097290 (+) 963 WP_001250097.1 ferrochelatase -
  FNE84_RS14970 (FNE84_15265) aes 3097287..3098246 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=326291 FNE84_RS14950 WP_001195025.1 3092678..3093283(+) (recR) [Escherichia coli strain STEC367]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=326291 FNE84_RS14950 WP_001195025.1 3092678..3093283(+) (recR) [Escherichia coli strain STEC367]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443