Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNE84_RS09450 Genome accession   NZ_CP041429
Coordinates   1982605..1984032 (-) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain STEC367     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977605..1989032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE84_RS09420 (FNE84_09585) yeeZ 1977660..1978484 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FNE84_RS09425 (FNE84_09590) yeeY 1978530..1979459 (+) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  FNE84_RS09430 (FNE84_09595) yoeI 1979674..1979736 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNE84_RS09435 (FNE84_09600) plaP 1979726..1981084 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNE84_RS09440 (FNE84_09605) tsuA 1981263..1982321 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  FNE84_RS09445 (FNE84_09610) tsuB 1982335..1982562 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNE84_RS09450 (FNE84_09615) sbcB 1982605..1984032 (-) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  FNE84_RS09455 (FNE84_09620) dacD 1984241..1985407 (+) 1167 WP_000830142.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNE84_RS09460 (FNE84_09625) sbmC 1985525..1985998 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  FNE84_RS09465 (FNE84_09630) yeeA 1986196..1987254 (+) 1059 WP_001200892.1 FUSC family protein -
  FNE84_RS09470 (FNE84_09635) tmaR 1987426..1987755 (+) 330 WP_000450409.1 DUF496 family protein -
  FNE84_RS25675 - 1987856..1988221 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  FNE84_RS25460 - 1988492..1988863 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=326272 FNE84_RS09450 WP_000980546.1 1982605..1984032(-) (sbcB) [Escherichia coli strain STEC367]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=326272 FNE84_RS09450 WP_000980546.1 1982605..1984032(-) (sbcB) [Escherichia coli strain STEC367]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCGG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGTTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment