Detailed information NTG0326260

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE84_RS05875
• Genome accession: NZ_CP041429
• Coordinates: 1223778..1224770 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC367
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1218778..1229770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE84_RS05845 (FNE84_05980)	ispD	1218839..1219549 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE84_RS05850 (FNE84_05985)	ispF	1219549..1220028 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE84_RS05855 (FNE84_05990)	truD	1220025..1221074 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FNE84_RS05860 (FNE84_05995)	surE	1221055..1221816 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNE84_RS05865 (FNE84_06000)	pcm	1221810..1222436 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE84_RS05870 (FNE84_06005)	nlpD	1222621..1223715 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNE84_RS05875 (FNE84_06010)	rpoS	1223778..1224770 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE84_RS05880 (FNE84_06015)	-	1224891..1225298 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
FNE84_RS05885 (FNE84_06020)	-	1225445..1226038 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE84_RS05890 (FNE84_06025)	-	1226038..1227465 (+)	1428	Protein_1173	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE84_RS05895 (FNE84_06030)	-	1227476..1227712 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE84_RS05900 (FNE84_06035)	ygbN	1227751..1229115 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326260 FNE84_RS05875 WP_000081550.1 1223778..1224770(+) (rpoS) [Escherichia coli strain STEC367]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326260 FNE84_RS05875 WP_000081550.1 1223778..1224770(+) (rpoS) [Escherichia coli strain STEC367]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715