Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FNE85_RS18025 Genome accession   NZ_CP041425
Coordinates   3628209..3628814 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain STEC388     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3623209..3633814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE85_RS18005 (FNE85_18280) aes 3623247..3624206 (+) 960 Protein_3581 acetyl esterase -
  FNE85_RS18010 (FNE85_18285) hemH 3624203..3625165 (-) 963 WP_001250096.1 ferrochelatase -
  FNE85_RS18015 (FNE85_18295) adk 3625401..3626045 (-) 645 WP_001220233.1 adenylate kinase -
  FNE85_RS18020 (FNE85_18300) htpG 3626225..3628099 (-) 1875 WP_161623708.1 molecular chaperone HtpG -
  FNE85_RS18025 (FNE85_18305) recR 3628209..3628814 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FNE85_RS18030 (FNE85_18310) ybaB 3628814..3629143 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FNE85_RS18035 (FNE85_18315) dnaX 3629196..3631127 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FNE85_RS18040 (FNE85_18320) apt 3631256..3631807 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FNE85_RS18045 (FNE85_18325) ybaN 3631960..3632337 (-) 378 WP_001188905.1 DUF454 family protein -
  FNE85_RS18050 (FNE85_18330) priC 3632407..3632934 (+) 528 WP_096128814.1 primosomal replication protein N'' -
  FNE85_RS18055 (FNE85_18335) rsmS 3632948..3633109 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FNE85_RS26540 - 3633162..3633260 (-) 99 Protein_3592 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=326209 FNE85_RS18025 WP_001195025.1 3628209..3628814(-) (recR) [Escherichia coli strain STEC388]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=326209 FNE85_RS18025 WP_001195025.1 3628209..3628814(-) (recR) [Escherichia coli strain STEC388]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCCATGTCGGAAA
TCGGGCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443