Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNE85_RS08815 Genome accession   NZ_CP041425
Coordinates   1834454..1835881 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain STEC388     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829454..1840881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE85_RS08785 (FNE85_08865) yeeZ 1829509..1830333 (+) 825 WP_096128835.1 SDR family oxidoreductase -
  FNE85_RS08790 (FNE85_08870) yeeY 1830379..1831308 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FNE85_RS08795 (FNE85_08875) yoeI 1831523..1831585 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNE85_RS08800 (FNE85_08880) plaP 1831575..1832933 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNE85_RS08805 (FNE85_08885) tsuA 1833112..1834170 (+) 1059 WP_096128836.1 thiosulfate utilization transporter TsuA/YeeE -
  FNE85_RS08810 (FNE85_08890) tsuB 1834184..1834411 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNE85_RS08815 (FNE85_08895) sbcB 1834454..1835881 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  FNE85_RS08820 (FNE85_08900) dacD 1836090..1837256 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNE85_RS08825 (FNE85_08905) sbmC 1837375..1837848 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FNE85_RS08830 (FNE85_08910) yeeA 1838046..1839104 (+) 1059 WP_001200891.1 FUSC family protein -
  FNE85_RS08835 (FNE85_08915) tmaR 1839276..1839605 (+) 330 WP_000450409.1 DUF496 family protein -
  FNE85_RS08840 (FNE85_08920) - 1839706..1839897 (-) 192 Protein_1751 EutP/PduV family microcompartment system protein -
  FNE85_RS08845 (FNE85_08925) cobU 1840064..1840609 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=326189 FNE85_RS08815 WP_000980581.1 1834454..1835881(-) (sbcB) [Escherichia coli strain STEC388]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=326189 FNE85_RS08815 WP_000980581.1 1834454..1835881(-) (sbcB) [Escherichia coli strain STEC388]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment