Detailed information NTG0326176

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE85_RS05255
• Genome accession: NZ_CP041425
• Coordinates: 1080559..1081551 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC388
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1075559..1086551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE85_RS05225 (FNE85_05295)	ispD	1075620..1076330 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE85_RS05230 (FNE85_05300)	ispF	1076330..1076809 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE85_RS05235 (FNE85_05305)	truD	1076806..1077855 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FNE85_RS05240 (FNE85_05310)	surE	1077836..1078597 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNE85_RS05245 (FNE85_05315)	pcm	1078591..1079217 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE85_RS05250 (FNE85_05320)	nlpD	1079402..1080496 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNE85_RS05255 (FNE85_05325)	rpoS	1080559..1081551 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE85_RS05260 (FNE85_05330)	ygbN	1081645..1083009 (-)	1365	WP_000104429.1	GntP family transporter	-
FNE85_RS05265 (FNE85_05335)	ygbM	1083098..1083874 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FNE85_RS05270 (FNE85_05340)	ygbL	1083879..1084517 (-)	639	WP_001278994.1	aldolase	-
FNE85_RS05275 (FNE85_05345)	otnK	1084514..1085776 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326176 FNE85_RS05255 WP_000081550.1 1080559..1081551(+) (rpoS) [Escherichia coli strain STEC388]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326176 FNE85_RS05255 WP_000081550.1 1080559..1081551(+) (rpoS) [Escherichia coli strain STEC388]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715