Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPA_RS13465 Genome accession   NC_014125
Coordinates   3034432..3035223 (-) Length   263 a.a.
NCBI ID   WP_013101887.1    Uniprot ID   -
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029432..3040223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS13455 (lpa_03784) legS1 3030578..3031735 (-) 1158 WP_011947512.1 Dot/Icm T4SS effector LegS1 -
  LPA_RS13460 (lpa_03787) dacB 3032547..3034340 (-) 1794 WP_010948289.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LPA_RS13465 (lpa_03788) spo0J 3034432..3035223 (-) 792 WP_013101887.1 ParB/RepB/Spo0J family partition protein Regulator
  LPA_RS13470 (lpa_03790) ceg33 3035340..3035843 (-) 504 WP_011947516.1 Dot/Icm T4SS effector Ceg33 -
  LPA_RS13475 (lpa_03792) - 3036017..3036766 (-) 750 WP_011947517.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LPA_RS13480 (lpa_03796) rsmB 3036763..3038046 (-) 1284 WP_011947518.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPA_RS13485 (lpa_03797) fmt 3038043..3038987 (-) 945 WP_013101888.1 methionyl-tRNA formyltransferase -
  LPA_RS13490 (lpa_03798) def 3038984..3039496 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30191.43 Da        Isoelectric Point: 5.9797

>NTDB_id=32608 LPA_RS13465 WP_013101887.1 3034432..3035223(-) (spo0J) [Legionella pneumophila 2300/99 Alcoy]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQIIGEEWSVRHLEQEIKFYKNKDMNSPKNPRKDRDIERLQTILAEQVGAPVQIINDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=32608 LPA_RS13465 WP_013101887.1 3034432..3035223(-) (spo0J) [Legionella pneumophila 2300/99 Alcoy]
ATGCAAACCCGATTTACTTATTTACCTGTCACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGGTTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCTGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGTTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAACAAGAAATGTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATTTTATAAAAATAAAGATATGAATAGCCCAAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCTTGGCTGAACAAGTGGGAGCTCCTGTACAAATTATAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGTTTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369