Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A2CP1_RS18165 Genome accession   NC_011891
Coordinates   4026366..4027754 (+) Length   462 a.a.
NCBI ID   WP_015934714.1    Uniprot ID   B8J641
Organism   Anaeromyxobacter dehalogenans 2CP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4021366..4032754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2CP1_RS18145 (A2cp1_3601) - 4022089..4022577 (+) 489 WP_015934710.1 hypothetical protein -
  A2CP1_RS18150 (A2cp1_3602) bioF 4022648..4023844 (-) 1197 WP_015934711.1 8-amino-7-oxononanoate synthase -
  A2CP1_RS18155 (A2cp1_3603) bioB 4023848..4024933 (-) 1086 WP_015934712.1 biotin synthase BioB -
  A2CP1_RS23310 (A2cp1_3604) - 4025120..4025272 (+) 153 WP_012527518.1 lmo0937 family membrane protein -
  A2CP1_RS18160 (A2cp1_3605) - 4025299..4026222 (-) 924 WP_015934713.1 hypothetical protein -
  A2CP1_RS18165 (A2cp1_3606) radA 4026366..4027754 (+) 1389 WP_015934714.1 DNA repair protein RadA Machinery gene
  A2CP1_RS18170 (A2cp1_3607) - 4027827..4028105 (+) 279 WP_015934715.1 hypothetical protein -
  A2CP1_RS18175 (A2cp1_3608) glpK 4028279..4029757 (-) 1479 WP_015934716.1 glycerol kinase GlpK -
  A2CP1_RS18180 (A2cp1_3609) - 4029761..4030627 (-) 867 WP_015934717.1 alpha/beta fold hydrolase -
  A2CP1_RS18185 (A2cp1_3610) - 4030760..4031074 (+) 315 WP_015934718.1 DUF3467 domain-containing protein -
  A2CP1_RS18190 (A2cp1_3611) - 4031377..4031628 (+) 252 WP_012527525.1 hypothetical protein -
  A2CP1_RS18195 (A2cp1_3612) - 4031625..4031963 (+) 339 WP_015934719.1 helix-hairpin-helix domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48252.50 Da        Isoelectric Point: 7.0283

>NTDB_id=32606 A2CP1_RS18165 WP_015934714.1 4026366..4027754(+) (radA) [Anaeromyxobacter dehalogenans 2CP-1]
MSRAAPRVRTVFACAECGQQSPKWLGQCPACKQWNTLQEEIAAPEPKVGAAPRGWGTHAAAKPLPLREVEAREEQRQRTG
IGELDRVLGGGVVPGALVLLGGDPGIGKSTLVLAALDRVARANPDRPVLYVSGEESARQVKLRADRLGVAARNLQVLAET
DALKVLQAAEALAPAAVAVDSIQTQYLPELQSAPGTVTQIREVTARLMALAKTTETPIFLIGHVTKDGSIAGPRVLEHMV
DTVLYFEGGGAHPYRVLRAHKNRFGSASEIGVFEMKAGGLAEVANPSALFLAERPEDAPGSAVTAVLNGTRTVLVEVQAL
VAPTGYGTPRRTALGVDGNRVALLAAVLEKKVGLEILPCDLFVNVAGGLSVDDPAADLAVVAALASSFRERALPARTLVL
GEVGLAGEVRAVSQPGIRLAEAARLGFQRAIVPAASLRHADAPDGIELVGVTTVADALDRLA

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=32606 A2CP1_RS18165 WP_015934714.1 4026366..4027754(+) (radA) [Anaeromyxobacter dehalogenans 2CP-1]
ATGTCGCGCGCCGCCCCGAGGGTCCGCACCGTGTTCGCCTGCGCCGAGTGCGGGCAGCAGAGCCCGAAGTGGCTCGGCCA
GTGCCCCGCCTGCAAGCAGTGGAACACGCTGCAGGAGGAGATCGCCGCCCCGGAGCCGAAGGTCGGCGCCGCGCCGCGCG
GCTGGGGCACGCACGCCGCGGCGAAGCCGCTGCCGCTGCGCGAGGTGGAGGCGCGCGAGGAGCAGCGGCAGCGCACCGGG
ATCGGCGAGCTGGACCGGGTGCTGGGCGGGGGCGTGGTGCCCGGCGCGCTCGTGCTCCTCGGCGGTGACCCCGGCATCGG
CAAGTCCACGCTGGTCCTGGCCGCGCTCGACCGCGTGGCCCGGGCGAACCCCGACCGCCCGGTGCTGTACGTCTCCGGCG
AGGAGTCGGCGCGGCAGGTGAAGCTCCGGGCCGACCGGCTCGGCGTCGCCGCCCGGAACCTCCAGGTGCTCGCCGAGACC
GACGCGCTCAAGGTGCTCCAGGCCGCCGAGGCGCTCGCCCCGGCCGCCGTGGCGGTGGACTCGATCCAGACGCAGTACCT
GCCCGAACTGCAGAGCGCGCCCGGCACCGTCACGCAGATCCGCGAGGTGACCGCGCGGCTCATGGCGCTCGCCAAGACCA
CCGAGACGCCGATCTTCCTCATCGGGCACGTCACCAAGGACGGCAGCATCGCCGGGCCGCGCGTGCTCGAGCACATGGTG
GACACGGTCCTCTACTTCGAGGGCGGCGGCGCCCACCCGTACCGCGTGCTCCGCGCGCACAAGAACCGCTTCGGCTCGGC
CAGCGAGATCGGCGTCTTCGAGATGAAGGCGGGCGGGCTCGCGGAGGTGGCGAACCCGTCGGCGCTGTTCCTGGCCGAGC
GCCCGGAGGACGCGCCCGGGAGCGCCGTGACGGCGGTGCTGAACGGCACGCGCACGGTGCTGGTCGAGGTGCAGGCGCTG
GTGGCGCCCACCGGCTACGGCACCCCGCGGCGGACCGCGCTGGGCGTGGACGGCAACCGCGTGGCGCTGCTCGCGGCGGT
GCTCGAGAAGAAGGTCGGGCTGGAGATCCTGCCCTGCGACCTGTTCGTCAACGTGGCCGGCGGGCTGTCGGTGGACGATC
CCGCCGCCGACCTCGCCGTGGTCGCCGCCCTCGCCTCGAGCTTCCGGGAGCGCGCCCTGCCGGCGCGGACGCTGGTGCTG
GGCGAGGTGGGCCTGGCGGGCGAGGTCCGGGCGGTGTCGCAGCCCGGGATCCGCCTGGCGGAGGCGGCGCGCCTCGGCTT
CCAGCGCGCGATCGTCCCCGCCGCCAGCCTCCGGCACGCCGACGCGCCCGACGGGATCGAGCTGGTGGGCGTCACGACCG
TCGCCGACGCCCTCGACCGGCTCGCGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(12-39)

AAA domain (AAA_25)

(78-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8J641

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.54

97.835

0.524
  radA Streptococcus pneumoniae Rx1

48.791

98.485

0.481
  radA Streptococcus pneumoniae D39

48.791

98.485

0.481
  radA Streptococcus pneumoniae R6

48.791

98.485

0.481
  radA Streptococcus pneumoniae TIGR4

48.791

98.485

0.481
  radA Streptococcus mitis NCTC 12261

48.791

98.485

0.481
  radA Streptococcus mitis SK321

48.791

98.485

0.481

Multiple sequence alignment