Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EGX80_RS04560 Genome accession   NZ_CP033815
Coordinates   855890..856603 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain FDAARGOS_514     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 850890..861603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX80_RS04550 (EGX80_04555) treC 851960..853588 (-) 1629 WP_011055080.1 alpha,alpha-phosphotrehalase -
  EGX80_RS04555 (EGX80_04560) treP 853655..855679 (-) 2025 WP_011055081.1 PTS system trehalose-specific EIIBC component -
  EGX80_RS04560 (EGX80_04565) treR 855890..856603 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  EGX80_RS04570 (EGX80_04575) - 856881..857147 (-) 267 WP_074375295.1 helix-turn-helix domain-containing protein -
  EGX80_RS04575 (EGX80_04580) - 857405..858262 (+) 858 Protein_881 VOC family protein -
  EGX80_RS04580 (EGX80_04585) yaaA 858304..859035 (+) 732 WP_011055084.1 peroxide stress protein YaaA -
  EGX80_RS04585 (EGX80_04590) nrdG 859209..859823 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  EGX80_RS04590 (EGX80_04595) - 859838..860332 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  EGX80_RS04595 (EGX80_04600) - 860341..861276 (-) 936 WP_011055086.1 Gfo/Idh/MocA family oxidoreductase -
  EGX80_RS10070 - 861305..861451 (-) 147 WP_011106921.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=326032 EGX80_RS04560 WP_002992823.1 855890..856603(+) (treR) [Streptococcus pyogenes strain FDAARGOS_514]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=326032 EGX80_RS04560 WP_002992823.1 855890..856603(+) (treR) [Streptococcus pyogenes strain FDAARGOS_514]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment