Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EGY05_RS17990 Genome accession   NZ_CP033811
Coordinates   3972301..3973650 (+) Length   449 a.a.
NCBI ID   WP_065399266.1    Uniprot ID   A0A1B8ZUM4
Organism   Chryseobacterium arthrosphaerae strain FDAARGOS_519     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3967301..3978650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY05_RS17975 (EGY05_18220) - 3968376..3969131 (+) 756 WP_123843417.1 SDR family oxidoreductase -
  EGY05_RS17980 (EGY05_18225) - 3969113..3970414 (+) 1302 WP_123843418.1 phosphatase PAP2/dual specificity phosphatase family protein -
  EGY05_RS17985 (EGY05_18230) - 3970418..3972118 (+) 1701 WP_123843419.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  EGY05_RS17990 (EGY05_18235) radA 3972301..3973650 (+) 1350 WP_065399266.1 DNA repair protein RadA Machinery gene
  EGY05_RS17995 (EGY05_18240) - 3973705..3974376 (+) 672 WP_123843420.1 class I SAM-dependent methyltransferase -
  EGY05_RS18000 (EGY05_18245) - 3974373..3975080 (+) 708 WP_123843421.1 VanW family protein -
  EGY05_RS18005 (EGY05_18250) - 3975077..3975670 (+) 594 WP_123843422.1 ACP phosphodiesterase -
  EGY05_RS18010 (EGY05_18255) - 3975667..3976182 (-) 516 WP_123843423.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49972.56 Da        Isoelectric Point: 6.6946

>NTDB_id=325972 EGY05_RS17990 WP_065399266.1 3972301..3973650(+) (radA) [Chryseobacterium arthrosphaerae strain FDAARGOS_519]
MAKLKTAYFCQNCGTQYPQWMGQCKNCGQWNTLVEEVVEKPSHKTPPFSKSKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIRIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=325972 EGY05_RS17990 WP_065399266.1 3972301..3973650(+) (radA) [Chryseobacterium arthrosphaerae strain FDAARGOS_519]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACTCAATATCCCCAATGGATGGGACAATGCAAAAACTG
CGGACAGTGGAATACACTCGTGGAAGAAGTAGTGGAAAAACCATCCCATAAAACTCCTCCATTTTCAAAAAGCAAGCAAC
ATGTCATCAACATTGTTGAAGTGGAAACCAGTGAGGAACCCAGAATCAAAACTCCTTCTGAGGAGCTTAACCGTGTTCTC
GGAGGCGGTATTGTTTTAGGCTCTGTTACGCTGATCGGCGGTGAACCCGGAATTGGAAAATCTACCCTGCTGCTCCAGCT
GGCCCTGAAAATGAAGAAAAAAATATTCTATGTTTCCGGGGAAGAAAGTGCCTCCCAGATCAAGATGAGAGCCGACAGAC
TGACGGATATCCAAAATCCGAACTGTTTTCTCTTTACCGAAACTTCACTGGAAAAAATCCTTCATGAAGCCAAAAAACTG
GAACCGGACTTTATGATCATCGACTCTATCCAGACGCTTCAGTCTCAGCTGATCGAAAGTTCTCCCGGAACCGTTTCCCA
GATCAGAGAATGTTCCAATGAAATTATCAAGTATGCCAAAGAAAACAATACTCCGGTATTTCTGGTAGGCCATATTACCA
AAGACGGACAGATTGCCGGCCCAAAAGTCCTGGAACATATGGTGGATGTGGTTTTAAATTTTGACGGGGACCGGAATCAC
CTTTTCAGGTTATTGAGGGCGAATAAAAACCGTTTTGGTTCTACTGCCGAAATCGGAATTTATGAAATGGTCTCCCAGGG
TCTGAAAGAGATTAAAAACCCTTCTGAAATTCTTATTACCAAAAAGTTTGAGGAACTGTCCGGAAATTCAGTAGCCGTAA
CCTTAGAAGGAAACCGGCCTATGCTTCTGGAAATCCAGGCCTTGGTGAGTACAGCGGTTTATGGTACTCCTCAGAGAAGC
TCTACCGGTTTTGATTCCAAGAGATTAAATATGCTTCTGGCAGTGCTTGAAAAAAGAGCAGGCTTTCAACTGGGTGCTAA
AGATGTCTTTCTCAACATCACCGGGGGAATAAAAACAGATGATCCAGCACTGGACCTTGCGGTTATTGCTTCAGTACTTT
CATCCAATGAAGATATTGCCATTTCCGAACACTATTGTTTTGCCGGAGAGATCGGACTGAGTGGAGAAATACGTCCGGTT
GCCCAGATTGAACAGAGAATCACCGAAGCTGAAAAGCTAGGATATGAAAAGATATTTGTGTCCAACCTTAATAAAATTCC
GAAGAGAAAATTTGGAATCAGGATTGAAGAGGTAAGTAAAATTGAAGATTTCCATGAAAGGCTTTTCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(64-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8ZUM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus pneumoniae Rx1

48.246

100

0.49
  radA Streptococcus pneumoniae D39

48.246

100

0.49
  radA Streptococcus pneumoniae R6

48.246

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.49
  radA Streptococcus mitis NCTC 12261

48.246

100

0.49
  radA Streptococcus mitis SK321

50.118

94.209

0.472

Multiple sequence alignment