Detailed information NTG0325943

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE88_RS05475
• Genome accession: NZ_CP041411
• Coordinates: 1142580..1143572 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC719
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1137580..1148572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE88_RS05445 (FNE88_05610)	ispD	1137641..1138351 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE88_RS05450 (FNE88_05615)	ispF	1138351..1138830 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE88_RS05455 (FNE88_05620)	truD	1138827..1139876 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
FNE88_RS05460 (FNE88_05625)	surE	1139857..1140618 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
FNE88_RS05465 (FNE88_05630)	pcm	1140612..1141238 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE88_RS05470 (FNE88_05635)	nlpD	1141423..1142517 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNE88_RS05475 (FNE88_05640)	rpoS	1142580..1143572 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE88_RS05480 (FNE88_05645)	-	1143693..1144100 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
FNE88_RS05485 (FNE88_05650)	-	1144247..1144840 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE88_RS05490 (FNE88_05655)	-	1144840..1146267 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE88_RS05495 (FNE88_05660)	-	1146278..1146514 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE88_RS05500 (FNE88_05665)	ygbN	1146554..1147918 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=325943 FNE88_RS05475 WP_000081550.1 1142580..1143572(+) (rpoS) [Escherichia coli strain STEC719]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=325943 FNE88_RS05475 WP_000081550.1 1142580..1143572(+) (rpoS) [Escherichia coli strain STEC719]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715