Detailed information NTG0325768

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E3Z24_RS05470
• Genome accession: NZ_CP041392
• Coordinates: 1121011..1122003 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1116011..1127003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3Z24_RS05440 (E3Z24_05440)	ispD	1116072..1116782 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E3Z24_RS05445 (E3Z24_05445)	ispF	1116782..1117261 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E3Z24_RS05450 (E3Z24_05450)	truD	1117258..1118307 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E3Z24_RS05455 (E3Z24_05455)	surE	1118288..1119049 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E3Z24_RS05460 (E3Z24_05460)	pcm	1119043..1119669 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E3Z24_RS05465 (E3Z24_05465)	nlpD	1119854..1120948 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
E3Z24_RS05470 (E3Z24_05470)	rpoS	1121011..1122003 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E3Z24_RS05475 (E3Z24_05475)	ygbN	1122097..1123461 (-)	1365	WP_000104441.1	GntP family transporter	-
E3Z24_RS05480 (E3Z24_05480)	ygbM	1123550..1124326 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
E3Z24_RS05485 (E3Z24_05485)	ygbL	1124331..1124969 (-)	639	WP_001278994.1	aldolase	-
E3Z24_RS05490 (E3Z24_05490)	otnK	1124966..1126228 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=325768 E3Z24_RS05470 WP_000081550.1 1121011..1122003(+) (rpoS) [Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=325768 E3Z24_RS05470 WP_000081550.1 1121011..1122003(+) (rpoS) [Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715