Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EGX95_RS12735 Genome accession   NZ_CP033795
Coordinates   1982986..1983267 (-) Length   93 a.a.
NCBI ID   WP_123805584.1    Uniprot ID   -
Organism   Bacillus sp. FDAARGOS_527     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977986..1988267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX95_RS12700 (EGX95_12700) - 1978201..1978683 (-) 483 WP_123805572.1 hypothetical protein -
  EGX95_RS12705 (EGX95_12705) - 1978929..1980125 (-) 1197 WP_142995889.1 hypothetical protein -
  EGX95_RS12710 (EGX95_12710) - 1980230..1980454 (-) 225 WP_123805576.1 hypothetical protein -
  EGX95_RS12715 (EGX95_12715) - 1981035..1981733 (+) 699 WP_123805578.1 protein kinase family protein -
  EGX95_RS12720 (EGX95_12720) - 1981867..1982580 (+) 714 WP_123805580.1 hypothetical protein -
  EGX95_RS12725 (EGX95_12725) - 1982593..1982760 (-) 168 WP_072192613.1 hypothetical protein -
  EGX95_RS12730 (EGX95_12730) - 1982787..1982984 (-) 198 WP_123805582.1 hypothetical protein -
  EGX95_RS12735 (EGX95_12735) abrB 1982986..1983267 (-) 282 WP_123805584.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EGX95_RS12740 (EGX95_12740) - 1983292..1983486 (-) 195 WP_192957646.1 hypothetical protein -
  EGX95_RS12745 (EGX95_12745) - 1983604..1983756 (-) 153 WP_192957647.1 BC1881 family protein -
  EGX95_RS12750 (EGX95_12750) - 1983753..1984685 (-) 933 WP_123805587.1 hypothetical protein -
  EGX95_RS12755 (EGX95_12755) - 1984702..1985019 (-) 318 WP_123805589.1 transglycosylase -
  EGX95_RS12760 (EGX95_12760) - 1985140..1985793 (-) 654 WP_123805590.1 hypothetical protein -
  EGX95_RS12765 (EGX95_12765) - 1985839..1986135 (-) 297 WP_042512759.1 hypothetical protein -
  EGX95_RS12770 (EGX95_12770) - 1986229..1986861 (+) 633 WP_123805592.1 hypothetical protein -
  EGX95_RS12775 (EGX95_12775) - 1986995..1987777 (-) 783 WP_192957648.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10271.81 Da        Isoelectric Point: 4.4805

>NTDB_id=325751 EGX95_RS12735 WP_123805584.1 1982986..1983267(-) (abrB) [Bacillus sp. FDAARGOS_527]
MKSTGIIRNIDPLGRIVVPMELRRTLDIQEKDPMEIFVDGESIILQKYNPNGSCQITGEVSDQNIELAGGKLVLSPEGID
QVLAEIESHLKGR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=325751 EGX95_RS12735 WP_123805584.1 1982986..1983267(-) (abrB) [Bacillus sp. FDAARGOS_527]
ATGAAATCAACAGGTATCATTCGTAACATCGACCCACTAGGACGAATCGTAGTTCCAATGGAATTACGTCGTACATTAGA
TATTCAGGAAAAGGATCCAATGGAGATTTTCGTAGATGGTGAATCTATTATTCTACAAAAATATAATCCAAATGGTTCTT
GCCAAATTACAGGTGAAGTTTCTGACCAAAATATCGAATTAGCTGGCGGGAAACTCGTACTGAGTCCCGAGGGAATCGAC
CAAGTTTTAGCGGAAATCGAATCACATTTGAAGGGGCGATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

64.835

97.849

0.634

Multiple sequence alignment