Detailed information NTG0032574

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LPA_RS06730
• Genome accession: NC_014125
• Coordinates: 1491302..1492327 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila 2300/99 Alcoy
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1486302..1497327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPA_RS06700 (lpa_01909)	-	1486733..1487050 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
LPA_RS06705 (lpa_01910)	-	1487087..1487458 (+)	372	WP_011946334.1	protease inhibitor I42 family protein	-
LPA_RS06710 (lpa_01911)	-	1487506..1489230 (-)	1725	WP_011946335.1	NAD-dependent malic enzyme	-
LPA_RS06715 (lpa_01912)	-	1489310..1489693 (+)	384	WP_011946336.1	hypothetical protein	-
LPA_RS06720 (lpa_01914)	surE	1489696..1490454 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
LPA_RS06725 (lpa_01915)	-	1490473..1491216 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
LPA_RS06730 (lpa_01916)	rpoS	1491302..1492327 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
LPA_RS06735 (lpa_01917)	hmgA	1492427..1493677 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
LPA_RS06740 (lpa_01918)	-	1493825..1494568 (+)	744	WP_011946341.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LPA_RS06745 (lpa_01919)	ruvC	1494568..1495092 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
LPA_RS06750 (lpa_01920)	ruvA	1495089..1495688 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
LPA_RS06755 (lpa_01921)	-	1495740..1496060 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=32574 LPA_RS06730 WP_011946339.1 1491302..1492327(+) (rpoS) [Legionella pneumophila 2300/99 Alcoy]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=32574 LPA_RS06730 WP_011946339.1 1491302..1492327(+) (rpoS) [Legionella pneumophila 2300/99 Alcoy]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACTCTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548