Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGX64_RS00750 Genome accession   NZ_CP033782
Coordinates   113241..113636 (-) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108241..118636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX64_RS00725 (EGX64_00725) thiE 108982..109620 (-) 639 WP_002458704.1 thiamine phosphate synthase -
  EGX64_RS00730 (EGX64_00730) thiM 109626..110414 (-) 789 WP_002486939.1 hydroxyethylthiazole kinase -
  EGX64_RS00735 (EGX64_00735) thiD 110407..111228 (-) 822 WP_002458705.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EGX64_RS00740 (EGX64_00740) tenA 111221..111910 (-) 690 WP_002447775.1 thiaminase II -
  EGX64_RS00745 (EGX64_00745) - 112194..112853 (-) 660 WP_002447776.1 transglycosylase family protein -
  EGX64_RS00750 (EGX64_00750) ssb 113241..113636 (-) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  EGX64_RS00755 (EGX64_00755) - 113827..114267 (+) 441 WP_002458706.1 YwpF-like family protein -
  EGX64_RS00760 (EGX64_00760) fabZ 114585..115022 (-) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EGX64_RS00765 (EGX64_00765) murA 115056..116321 (-) 1266 WP_002447780.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EGX64_RS00770 (EGX64_00770) - 116431..116664 (-) 234 WP_002495678.1 DUF1146 family protein -
  EGX64_RS00775 (EGX64_00775) - 116813..117217 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=325664 EGX64_RS00750 WP_002447777.1 113241..113636(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_529]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=325664 EGX64_RS00750 WP_002447777.1 113241..113636(-) (ssb) [Staphylococcus epidermidis strain FDAARGOS_529]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment