Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3Z32_RS01280 Genome accession   NZ_CP041359
Coordinates   74477..74992 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain U1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 69477..79992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3Z32_RS01255 (E3Z32_01255) ygaZ 69876..70613 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  E3Z32_RS01260 (E3Z32_01260) ygaH 70603..70938 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  E3Z32_RS01265 (E3Z32_01265) emrR 71029..71559 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E3Z32_RS01270 (E3Z32_01270) emrA 71686..72858 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E3Z32_RS01275 (E3Z32_01275) emrB 72875..74413 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E3Z32_RS01280 (E3Z32_01280) luxS 74477..74992 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  E3Z32_RS01285 (E3Z32_01285) gshA 75142..76698 (-) 1557 WP_001551535.1 glutamate--cysteine ligase -
  E3Z32_RS01290 (E3Z32_01290) yqaA 76771..77199 (-) 429 WP_001287454.1 YqaA family protein -
  E3Z32_RS01295 (E3Z32_01295) yqaB 77196..77762 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E3Z32_RS01325 (E3Z32_01325) csrA 78992..79177 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=325664 E3Z32_RS01280 WP_001130211.1 74477..74992(-) (luxS) [Escherichia coli strain U1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=325664 E3Z32_RS01280 WP_001130211.1 74477..74992(-) (luxS) [Escherichia coli strain U1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment