Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IHMA87_RS28190 Genome accession   NZ_CP041354
Coordinates   5883746..5884270 (-) Length   174 a.a.
NCBI ID   WP_034082521.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5878746..5889270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS28175 (IHMA87_05520) aroB 5879862..5880968 (-) 1107 WP_034082519.1 3-dehydroquinate synthase -
  IHMA87_RS28180 (IHMA87_05521) aroK 5881018..5881536 (-) 519 WP_003148769.1 shikimate kinase AroK -
  IHMA87_RS28185 (IHMA87_05522) pilQ 5881548..5883692 (-) 2145 WP_003148771.1 type 4a pilus secretin PilQ Machinery gene
  IHMA87_RS28190 (IHMA87_05523) comL/pilP 5883746..5884270 (-) 525 WP_034082521.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IHMA87_RS28195 (IHMA87_05524) pilO 5884267..5884890 (-) 624 WP_003148775.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHMA87_RS28200 (IHMA87_05525) pilN 5884887..5885483 (-) 597 WP_003148777.1 type 4a pilus biogenesis protein PilN Machinery gene
  IHMA87_RS28205 (IHMA87_05526) pilM 5885483..5886547 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IHMA87_RS28210 (IHMA87_05527) - 5886732..5889203 (+) 2472 WP_012077723.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19085.90 Da        Isoelectric Point: 9.4114

>NTDB_id=325641 IHMA87_RS28190 WP_034082521.1 5883746..5884270(-) (comL/pilP) [Pseudomonas aeruginosa strain AZPAE15042]
MRARLIMSSLLLASLAGCGGGSDFADLQTYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=325641 IHMA87_RS28190 WP_034082521.1 5883746..5884270(-) (comL/pilP) [Pseudomonas aeruginosa strain AZPAE15042]
ATGAGAGCCCGTCTGATCATGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGCTCCGACTTCGCCGACCT
GCAGACCTACATGGACGAGGTACGGGCGCGTCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TTACCTATAGCGCCGCATCGCTGCGCAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACGGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAAACCTTCGAGATGGTCGGCAC
CCTGTCCAATGCCCAGGGCACCTTCGCCCTGGTGAAGGGGGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362