Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHMA87_RS23350 Genome accession   NZ_CP041354
Coordinates   4862297..4863511 (-) Length   404 a.a.
NCBI ID   WP_033996852.1    Uniprot ID   A0A2R3J0M9
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4857297..4868511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS23345 (IHMA87_04556) - 4860676..4861854 (-) 1179 WP_034079112.1 substrate-binding domain-containing protein -
  IHMA87_RS23350 (IHMA87_04558) pilC 4862297..4863511 (-) 1215 WP_033996852.1 type II secretion system inner membrane protein GspF Machinery gene
  IHMA87_RS23355 (IHMA87_04559) pilB 4863511..4864920 (-) 1410 WP_034079109.1 type II secretion system ATPase GspE Machinery gene
  IHMA87_RS23360 (IHMA87_04560) gspD 4864917..4867328 (-) 2412 WP_034079106.1 type II secretion system secretin GspD -
  IHMA87_RS23365 (IHMA87_04561) - 4867325..4867891 (-) 567 WP_034079105.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43385.55 Da        Isoelectric Point: 9.7361

>NTDB_id=325620 IHMA87_RS23350 WP_033996852.1 4862297..4863511(-) (pilC) [Pseudomonas aeruginosa strain AZPAE15042]
MQTFRYEAADAQGRIETGTLEADSPRGALGQLRARGLTPLEVREQAGAGGGQGGVALFAPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLGAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRVMLQASDFVRAWGWLCAGALGGGFWGWRL
YLRNPQARLDWHRRVLRLPLVGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLARAVEEATAQVREGVSL
ASALRARQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLMIVMAVLMPIIEMN
QLVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=325620 IHMA87_RS23350 WP_033996852.1 4862297..4863511(-) (pilC) [Pseudomonas aeruginosa strain AZPAE15042]
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGGCGGATCGAGACCGGGACCCTGGAGGCGGACAGCCCGCGCGG
CGCCCTCGGCCAGCTGCGCGCCCGCGGCCTGACTCCGCTGGAGGTCCGCGAGCAGGCCGGCGCCGGCGGCGGACAGGGTG
GCGTCGCTCTGTTCGCACCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAGCTGGCCAGTCTGCTGGCCGCC
AGCCTGCCGCTGGAAGCGGCGCTGAGCGCGACCCTCGACCAGGCCGAGCGCAAGCATATTGCACAGACCCTCGGCGCCGT
GCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCCCTCGCCGCGCGGCCGCGCGACTTTCCGGAAATCTACCGGG
CGCTGGTGGCGGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTAATGGAGCGCCTGGCCGACTACATCGAGGAACGTAAC
GCCTTGCGCGGCAAGATCCTCACCGCGTTCATCTATCCGGCGGTGGTCGGCGTGGTTTCCATCGGTATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTTTCCCAGGCGCGCCAGGACCTGCCGGCGCTGACCCGGGTGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCGGGAGCCCTCGGCGGTGGTTTCTGGGGCTGGCGTCTG
TACCTGCGCAACCCGCAGGCGCGGCTCGACTGGCATCGCCGGGTGCTGCGCCTGCCCCTGGTCGGCCGCTTCGTGCTCGG
GGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTGCCGCTGCTGCGCGCGCTCGACGCGG
CGCGCCAGACCCTGGCCAACGACTGCCTGGCGCGAGCGGTGGAGGAGGCCACCGCGCAGGTCCGCGAGGGCGTCTCGCTG
GCCTCGGCGCTGCGCGCGCGGCAGGTATTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGTGCGCT
GCCACCGATGCTCGACCGCGCGGCGCAGACCCTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGCTGCTCG
AACCGCTGATGATCGTGGTCATGGGCGGCGTGGTGCTGATGATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAACTGGTCCAGTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3J0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

37.376

100

0.374