Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   IHMA87_RS10025 Genome accession   NZ_CP041354
Coordinates   2109538..2110152 (-) Length   204 a.a.
NCBI ID   WP_003153140.1    Uniprot ID   A0A2R3IUL5
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2104538..2115152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS10000 (IHMA87_01955) - 2104986..2105249 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  IHMA87_RS10005 (IHMA87_01956) topA 2105340..2107946 (+) 2607 WP_034078458.1 type I DNA topoisomerase -
  IHMA87_RS10010 (IHMA87_01957) - 2108053..2108571 (+) 519 WP_034078459.1 DUF6586 family protein -
  IHMA87_RS10015 (IHMA87_01958) - 2108778..2109011 (+) 234 WP_003153141.1 hypothetical protein -
  IHMA87_RS10020 (IHMA87_01959) sulA 2109035..2109526 (-) 492 WP_034078460.1 SOS-induced cell division inhibitor SulA -
  IHMA87_RS10025 (IHMA87_01960) dinR/lexA 2109538..2110152 (-) 615 WP_003153140.1 transcriptional repressor LexA Regulator
  IHMA87_RS10030 (IHMA87_01961) psrA 2110384..2111085 (+) 702 WP_012075149.1 transcriptional regulator PsrA -
  IHMA87_RS10035 (IHMA87_01962) nagZ 2111278..2112276 (+) 999 WP_034078462.1 beta-N-acetylhexosaminidase -
  IHMA87_RS10040 (IHMA87_01963) - 2112288..2113025 (+) 738 WP_003153138.1 S-methyl-5'-thioinosine phosphorylase -
  IHMA87_RS10045 (IHMA87_01964) - 2113071..2113700 (-) 630 WP_003153137.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22521.95 Da        Isoelectric Point: 6.4989

>NTDB_id=325591 IHMA87_RS10025 WP_003153140.1 2109538..2110152(-) (dinR/lexA) [Pseudomonas aeruginosa strain AZPAE15042]
MQKLTPRQSEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARLGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=325591 IHMA87_RS10025 WP_003153140.1 2109538..2110152(-) (dinR/lexA) [Pseudomonas aeruginosa strain AZPAE15042]
ATGCAGAAGCTGACGCCCCGCCAATCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGCGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCGCGCAAGG
GCGCCATCGAGATGACCCCGGGCGCTTCCCGCGGCATTCGCATCCCCGGCTTCGAACCGCACGCGGCGAACGACGACGAA
GGCCTGCCGGTGATCGGCCGGGTCGCCGCCGGCGCACCGATTCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAATGGCCAGGTGGTGGTCGCGCGGCTCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCCGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(83-196)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IUL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387