Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   IHMA87_RS09365 Genome accession   NZ_CP041354
Coordinates   1958588..1961326 (+) Length   912 a.a.
NCBI ID   WP_034078386.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953588..1966326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS09345 (IHMA87_01826) - 1954373..1954984 (+) 612 WP_238578134.1 class I SAM-dependent methyltransferase -
  IHMA87_RS09350 (IHMA87_01827) leuB 1955043..1956125 (+) 1083 WP_034078383.1 3-isopropylmalate dehydrogenase -
  IHMA87_RS09355 (IHMA87_01828) asd 1956195..1957307 (+) 1113 WP_034078385.1 aspartate-semialdehyde dehydrogenase -
  IHMA87_RS09360 (IHMA87_01829) - 1957409..1958419 (+) 1011 WP_033977034.1 aspartate-semialdehyde dehydrogenase -
  IHMA87_RS09365 (IHMA87_01830) fimV 1958588..1961326 (+) 2739 WP_034078386.1 motility hub landmark protein FimV Machinery gene
  IHMA87_RS09370 (IHMA87_01831) truA 1961348..1962205 (+) 858 WP_034078387.1 tRNA pseudouridine(38-40) synthase TruA -
  IHMA87_RS09375 (IHMA87_01832) - 1962295..1962930 (+) 636 WP_034078388.1 phosphoribosylanthranilate isomerase -
  IHMA87_RS09380 (IHMA87_01833) accD 1963199..1964071 (+) 873 WP_012075059.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  IHMA87_RS09385 (IHMA87_01834) folC 1964068..1965357 (+) 1290 WP_034078389.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  IHMA87_RS09390 (IHMA87_01835) - 1965361..1966020 (+) 660 WP_034078390.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 912 a.a.        Molecular weight: 95703.80 Da        Isoelectric Point: 3.9275

>NTDB_id=325588 IHMA87_RS09365 WP_034078386.1 1958588..1961326(+) (fimV) [Pseudomonas aeruginosa strain AZPAE15042]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRASSAPRAPQ
APAPVRTTAPVGSETYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAASAGARQLDATQRSAAGSAPAKVDAPDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLAAEGQGLAQPGAAQVDAGAAAQAPAAAAPTPA
PAGEAPAAPAQPPVAPPPAPAAETPPAPAAPAPVQTEEPAEASFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQK
EKDEAAALAAEAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAASTEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAI
YDEPQRSDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELGSFSLDDL
SLDHTGHAAGPDAAGQDLDDAFDLSLDDLDGDLGGDEVQADLKSDSGALDDLTLDSDLDLAASAPVEKPADDLDFGLDFA
DLAETPVDAKGDGLGDFSLDLDAPEDKLSDDDFLLSLNDDAAAAAPADNGFGLDTEAADEPSLSLPDDFDLSLADEPAEP
AVPAKSEDSFAAQLDEVSAQLDELASNLDEPKNAAPSFSAEDAAIASTLDGESDDDFDFLSGADEAATKLDLARAYIDMG
DSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2739 bp        

>NTDB_id=325588 IHMA87_RS09365 WP_034078386.1 1958588..1961326(+) (fimV) [Pseudomonas aeruginosa strain AZPAE15042]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCACGGGTTGGGACT
CGGCGAAATAACCCTGAAGTCGGCGTTGAACCAGCCGCTGGATGCCGAGATCGAGCTGCTCGAAGTCCGCGACCTGAGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAGGAATTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTTACCGAC
CTGAAGTTCACCCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACCTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTCGTCCAGGTCCTCTGGCCGAACGGCCGCCTGCTGCGCGAATACACCGTCCTGCTGGATCCGCCGCTGT
ACTCGCCGCAGGCCGCGGCGAGCGCCCCGCAGGCACCGGTCAGCGCGCCGCGGGCGAGCAGCGCTCCACGTGCCCCGCAG
GCGCCGGCCCCGGTGCGGACCACCGCGCCGGTCGGCAGCGAGACCTATCGCACCGTGTCCAACGACACGCTGTGGGAGAT
CGCCCAGCGCAACCGTACCGACCGGGTTTCCGTGCCGCAGGCGATGCTCGCCTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATCCCCACCGAACAACAGATGCTGGAGCGCTCCCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGCCAGCGCCGGCGC
CCGGCAATTGGACGCGACCCAGCGCAGCGCCGCCGGTTCGGCGCCGGCCAAGGTCGACGCCCCGGACAACCTGCGCCTGG
TTTCCGGCGAAGGCAAGGCCAGCAAGGGGGCCGACAAGGGCGGCAAGGGTGACAGCAAGGCGATCGCCGACACCCTGGCG
GTGACCAAGGAAAGCCTGGACAGCACCCGTCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGACCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGCTGATCCAGCTGAAAGACGCGCAGTTGGCCAAGCTGCAGGGGCAATTGGCTGCCGAAGGCCAGG
GCTTAGCCCAGCCGGGTGCGGCCCAGGTGGATGCCGGCGCCGCTGCGCAAGCTCCCGCCGCCGCAGCGCCGACCCCGGCT
CCCGCCGGCGAGGCGCCAGCCGCTCCGGCGCAGCCTCCGGTAGCGCCGCCGCCCGCGCCAGCGGCCGAGACCCCGCCGGC
ACCAGCCGCACCGGCCCCGGTACAGACGGAAGAACCGGCGGAAGCGAGTTTCCTCGACGAGTTGCTGGCCAATCCGCTGT
GGCTGGCGGTGATCGGCGGTAGCGCGCTGCTGGCCTTGCTGGTCCTGCTGATGATTCTGTCCCGGCGCAATGCGCAGAAG
GAGAAGGACGAGGCTGCGGCCCTGGCGGCGGAAGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTT
CGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCGGCCGTTGCGGCGTCGACCGAGAAGACCACCGCGCAGACTT
CCGATGCGCTGGGCGAGGCCGATATCTACATCGCCTACGGACGCTTCAACCAGGCCGCCGAACTGCTGCAGAACGCCATT
TATGACGAGCCGCAGCGCAGCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGCTTCGC
CCGCCAGGAAAACGAACTGCGCGAGATCGGTGGCGCCCAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCGATGG
TGGCGGTGGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAACTGGGCAGCTTCAGCCTCGACGACCTG
TCGCTGGACCACACCGGTCATGCGGCCGGGCCGGACGCGGCCGGGCAGGACCTCGACGACGCCTTCGACCTGAGCCTGGA
TGACCTCGATGGCGATCTCGGCGGTGACGAGGTGCAGGCCGACCTCAAGTCCGATAGCGGTGCGCTGGACGACCTGACCC
TGGACAGCGATCTCGACCTGGCTGCCTCGGCGCCGGTGGAGAAGCCGGCCGATGACCTCGATTTCGGCCTGGACTTCGCC
GACCTGGCGGAGACCCCGGTCGACGCCAAGGGCGACGGCCTGGGTGATTTCTCCCTGGACCTCGATGCGCCGGAAGACAA
GCTGTCGGATGACGATTTCCTGCTCTCGCTGAATGACGACGCGGCCGCCGCGGCGCCCGCCGACAACGGGTTCGGCCTCG
ACACCGAGGCCGCCGACGAGCCGTCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAACCGGCGGAACCG
GCCGTCCCGGCGAAGAGCGAAGACAGTTTTGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAATTGGCCAGCAA
TCTTGACGAGCCGAAGAATGCGGCGCCGAGCTTCTCGGCCGAGGATGCGGCGATCGCCTCGACCCTGGATGGGGAATCCG
ACGACGACTTCGATTTCCTTTCCGGCGCCGATGAAGCGGCGACCAAGCTGGATCTGGCGCGTGCCTATATCGACATGGGT
GACAGCGAGGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGCAACGACAGCCAGCAGGCGGAAGCCCGCGAGTT
GCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

96.364

42.215

0.407