Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EGY18_RS04855 Genome accession   NZ_CP033771
Coordinates   1023542..1024177 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain FDAARGOS_532     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018542..1029177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY18_RS04825 (EGY18_04800) murB 1019640..1020659 (-) 1020 WP_019416379.1 UDP-N-acetylmuramate dehydrogenase -
  EGY18_RS04830 (EGY18_04805) - 1020656..1021120 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  EGY18_RS04835 (EGY18_04810) kdsB 1021120..1021884 (-) 765 WP_016852666.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EGY18_RS04840 (EGY18_04815) - 1021884..1022069 (-) 186 WP_003091157.1 Trm112 family protein -
  EGY18_RS04845 (EGY18_04820) lpxK 1022107..1023105 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  EGY18_RS04850 (EGY18_04825) - 1023105..1023545 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  EGY18_RS04855 (EGY18_04830) exbB 1023542..1024177 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EGY18_RS04860 (EGY18_04835) comA 1024250..1026475 (-) 2226 WP_016852665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EGY18_RS04865 (EGY18_04840) - 1026606..1027139 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  EGY18_RS04870 (EGY18_04845) - 1027227..1028471 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=325584 EGY18_RS04855 WP_003091163.1 1023542..1024177(-) (exbB) [Pseudomonas aeruginosa strain FDAARGOS_532]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=325584 EGY18_RS04855 WP_003091163.1 1023542..1024177(-) (exbB) [Pseudomonas aeruginosa strain FDAARGOS_532]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGAA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGTACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment