Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IHMA87_RS02040 Genome accession   NZ_CP041354
Coordinates   419031..419396 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414031..424396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS02010 (IHMA87_00382) pyrR 414665..415177 (-) 513 WP_003157749.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IHMA87_RS02015 (IHMA87_00383) ruvX 415278..415712 (-) 435 WP_034080818.1 Holliday junction resolvase RuvX -
  IHMA87_RS02020 (IHMA87_00384) - 415712..416281 (-) 570 WP_034080820.1 YqgE/AlgH family protein -
  IHMA87_RS02025 (IHMA87_00385) - 416330..417223 (-) 894 WP_033999665.1 energy transducer TonB -
  IHMA87_RS02030 (IHMA87_00386) gshB 417369..418322 (-) 954 WP_012073999.1 glutathione synthase -
  IHMA87_RS02035 (IHMA87_00387) pilG 418577..418984 (+) 408 WP_003148848.1 twitching motility response regulator PilG Regulator
  IHMA87_RS02040 (IHMA87_00388) pilH 419031..419396 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  IHMA87_RS02045 (IHMA87_00389) - 419446..419982 (+) 537 WP_003148849.1 chemotaxis protein CheW -
  IHMA87_RS02050 (IHMA87_00390) pilJ 420068..422116 (+) 2049 WP_012074000.1 chemotaxis chemoreceptor PilJ -
  IHMA87_RS02055 (IHMA87_00391) pilK 422177..423052 (+) 876 WP_034080821.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=325568 IHMA87_RS02040 WP_003084587.1 419031..419396(+) (pilH) [Pseudomonas aeruginosa strain AZPAE15042]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=325568 IHMA87_RS02040 WP_003084587.1 419031..419396(+) (pilH) [Pseudomonas aeruginosa strain AZPAE15042]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCGCGCCAGGAAAAGCCCGACGTGGTCCTGATGGATATCG
TCATGCCCGGCCTCAACGGGTTCCAGGCGACCCGCCAGCTGACCAAGGACGCCGAGACCAGCGCCATTCCGGTGATCATC
GTCACCACCAAGGATCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACGCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364