Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EGX93_RS02950 Genome accession   NZ_CP033762
Coordinates   470124..470753 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_536     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 465124..475753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS02930 (EGX93_02930) ycbZ 465524..467284 (-) 1761 WP_000156498.1 Lon protease family protein -
  EGX93_RS02935 (EGX93_02935) matP 467470..467922 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  EGX93_RS02940 (EGX93_02940) ompA 468000..469040 (-) 1041 WP_001313715.1 porin OmpA -
  EGX93_RS02945 (EGX93_02945) sulA 469396..469905 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  EGX93_RS02950 (EGX93_02950) sxy/tfoX 470124..470753 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EGX93_RS02955 (EGX93_02955) yccS 470716..472878 (-) 2163 WP_000875040.1 YccS family putative transporter -
  EGX93_RS02960 (EGX93_02960) yccF 472888..473334 (-) 447 WP_001261236.1 YccF domain-containing protein -
  EGX93_RS02965 (EGX93_02965) helD 473457..475511 (+) 2055 WP_024008972.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=325461 EGX93_RS02950 WP_000839153.1 470124..470753(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_536]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=325461 EGX93_RS02950 WP_000839153.1 470124..470753(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_536]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment