Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | FLK62_RS09555 | Genome accession | NZ_CP041334 |
| Coordinates | 1896170..1896511 (+) | Length | 113 a.a. |
| NCBI ID | WP_010786294.1 | Uniprot ID | B8F573 |
| Organism | Glaesserella parasuis strain HPS412 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1891170..1901511
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLK62_RS09535 (FLK62_09660) | - | 1892445..1893032 (-) | 588 | WP_010786297.1 | NAD(P)H-dependent oxidoreductase | - |
| FLK62_RS09540 (FLK62_09665) | waaF | 1893128..1894180 (-) | 1053 | WP_176443853.1 | lipopolysaccharide heptosyltransferase II | - |
| FLK62_RS09545 (FLK62_09670) | - | 1894189..1894587 (-) | 399 | WP_005714011.1 | MliC family protein | - |
| FLK62_RS09550 (FLK62_09675) | - | 1894647..1895912 (-) | 1266 | WP_012621949.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| FLK62_RS09555 (FLK62_09680) | comEA/comE1 | 1896170..1896511 (+) | 342 | WP_010786294.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FLK62_RS09560 (FLK62_09685) | - | 1896611..1897060 (-) | 450 | Protein_1873 | IS5 family transposase | - |
| FLK62_RS09565 (FLK62_09690) | epmA | 1897201..1898181 (+) | 981 | WP_176443854.1 | elongation factor P--(R)-beta-lysine ligase | - |
| FLK62_RS09570 (FLK62_09695) | - | 1898234..1898512 (+) | 279 | WP_005714674.1 | DUF1778 domain-containing protein | - |
| FLK62_RS09575 (FLK62_09700) | - | 1898513..1899010 (+) | 498 | WP_005714675.1 | GNAT family N-acetyltransferase | - |
| FLK62_RS09580 (FLK62_09705) | - | 1899024..1899806 (+) | 783 | WP_010786292.1 | YchF/TatD family DNA exonuclease | - |
| FLK62_RS09585 (FLK62_09710) | - | 1899844..1900371 (+) | 528 | WP_010786291.1 | DUF1523 family protein | - |
| FLK62_RS09590 (FLK62_09715) | lpxH | 1900477..1901205 (+) | 729 | WP_010786290.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12407.27 Da Isoelectric Point: 9.8972
>NTDB_id=325461 FLK62_RS09555 WP_010786294.1 1896170..1896511(+) (comEA/comE1) [Glaesserella parasuis strain HPS412]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
Nucleotide
Download Length: 342 bp
>NTDB_id=325461 FLK62_RS09555 WP_010786294.1 1896170..1896511(+) (comEA/comE1) [Glaesserella parasuis strain HPS412]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
98.23 |
100 |
0.982 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.13 |
100 |
0.602 |