Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FLK62_RS03940 Genome accession   NZ_CP041334
Coordinates   797345..797854 (-) Length   169 a.a.
NCBI ID   WP_112063019.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS412     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 792345..802854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK62_RS03905 (FLK62_03940) hscB 792654..793175 (+) 522 WP_176443545.1 Fe-S protein assembly co-chaperone HscB -
  FLK62_RS03910 (FLK62_03945) - 793296..793931 (+) 636 WP_160420000.1 DUF2625 family protein -
  FLK62_RS03915 (FLK62_03950) hscA 794048..795904 (+) 1857 WP_160412869.1 Fe-S protein assembly chaperone HscA -
  FLK62_RS03920 (FLK62_03955) fdx 796002..796343 (+) 342 WP_005711412.1 ISC system 2Fe-2S type ferredoxin -
  FLK62_RS03925 (FLK62_03960) iscX 796343..796537 (+) 195 WP_005711410.1 Fe-S cluster assembly protein IscX -
  FLK62_RS03930 (FLK62_03965) - 796622..797050 (-) 429 Protein_753 ATP-binding cassette domain-containing protein -
  FLK62_RS03935 (FLK62_03970) - 797049..797228 (-) 180 WP_176443546.1 hypothetical protein -
  FLK62_RS03940 (FLK62_03975) luxS 797345..797854 (-) 510 WP_112063019.1 S-ribosylhomocysteine lyase Regulator
  FLK62_RS03945 (FLK62_03980) typA 798118..799965 (+) 1848 WP_010785890.1 translational GTPase TypA -
  FLK62_RS03950 (FLK62_03985) - 800014..800277 (+) 264 WP_012621534.1 GrxA family glutaredoxin -
  FLK62_RS03955 (FLK62_03990) - 800669..800989 (-) 321 WP_235671312.1 DUF5339 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18988.87 Da        Isoelectric Point: 6.4914

>NTDB_id=325443 FLK62_RS03940 WP_112063019.1 797345..797854(-) (luxS) [Glaesserella parasuis strain HPS412]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDKTKIPELNEFQCGSYKEHSLADAHEIARNVLKQPIGINRNKDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=325443 FLK62_RS03940 WP_112063019.1 797345..797854(-) (luxS) [Glaesserella parasuis strain HPS412]
ATGCCTTTACTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCTCCTGCGGTGCGTGTTGCAAAAACAATGACAAC
CCCGAAGGGAGATACGATTACTGTGTTTGATTTGCGTTTTGTCCGTCCAAACATTGAGATTTTATCACCTCGTGGTATTC
ATACGATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCG
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCAGCTGAAGAAGTGGCAAAAGCTTGGGAAGCCTC
TATGCGTGATGCGTTAGAGAAAGTGCCTGATAAAACTAAAATTCCTGAGTTAAATGAGTTTCAATGTGGTTCATATAAGG
AACATTCTCTTGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACAAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

70.238

99.408

0.698