Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EGY03_RS23380 Genome accession   NZ_CP033756
Coordinates   4577117..4577713 (+) Length   198 a.a.
NCBI ID   WP_023312915.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain FDAARGOS_566     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4572117..4582713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY03_RS23355 (EGY03_23345) - 4572309..4574066 (-) 1758 WP_016529118.1 Lon protease family protein -
  EGY03_RS23360 (EGY03_23350) matP 4574252..4574704 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  EGY03_RS23365 (EGY03_23355) ompA 4574836..4575906 (-) 1071 WP_002898408.1 porin OmpA -
  EGY03_RS23370 (EGY03_23360) sulA 4576259..4576768 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  EGY03_RS23380 (EGY03_23370) sxy/tfoX 4577117..4577713 (+) 597 WP_023312915.1 TfoX/Sxy family DNA transformation protein Regulator
  EGY03_RS23385 (EGY03_23375) yccS 4577727..4579862 (-) 2136 WP_002898422.1 YccS family putative transporter -
  EGY03_RS23390 (EGY03_23380) - 4579880..4580326 (-) 447 WP_002898425.1 YccF domain-containing protein -
  EGY03_RS23395 (EGY03_23385) helD 4580451..4582505 (+) 2055 WP_023312916.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22515.13 Da        Isoelectric Point: 10.2361

>NTDB_id=325442 EGY03_RS23380 WP_023312915.1 4577117..4577713(+) (sxy/tfoX) [Klebsiella pneumoniae strain FDAARGOS_566]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDNTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=325442 EGY03_RS23380 WP_023312915.1 4577117..4577713(+) (sxy/tfoX) [Klebsiella pneumoniae strain FDAARGOS_566]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATAATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment