Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EGY19_RS09250 Genome accession   NZ_CP033745
Coordinates   1899152..1900528 (-) Length   458 a.a.
NCBI ID   WP_060181327.1    Uniprot ID   -
Organism   Burkholderia multivorans strain FDAARGOS_548     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894152..1905528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY19_RS09230 (EGY19_09175) cls 1894684..1896123 (+) 1440 WP_105773077.1 cardiolipin synthase -
  EGY19_RS09235 (EGY19_09180) - 1896165..1896644 (-) 480 WP_006402630.1 glutathione peroxidase -
  EGY19_RS09240 (EGY19_09185) - 1896780..1898711 (+) 1932 WP_012213128.1 ATP-binding cassette domain-containing protein -
  EGY19_RS09245 (EGY19_09190) - 1898748..1899014 (-) 267 WP_006402628.1 DUF2866 domain-containing protein -
  EGY19_RS09250 (EGY19_09195) radA 1899152..1900528 (-) 1377 WP_060181327.1 DNA repair protein RadA Machinery gene
  EGY19_RS09255 (EGY19_09200) alr 1900539..1901609 (-) 1071 WP_006402626.1 alanine racemase -
  EGY19_RS09260 (EGY19_09205) lplT 1901828..1903135 (+) 1308 WP_006407724.1 lysophospholipid transporter LplT -
  EGY19_RS09265 (EGY19_09210) thiD 1903194..1904003 (+) 810 WP_105773078.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EGY19_RS09270 (EGY19_09215) - 1904022..1904996 (-) 975 WP_105773079.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48798.29 Da        Isoelectric Point: 6.9502

>NTDB_id=325396 EGY19_RS09250 WP_060181327.1 1899152..1900528(-) (radA) [Burkholderia multivorans strain FDAARGOS_548]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSDTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLTVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=325396 EGY19_RS09250 WP_060181327.1 1899152..1900528(-) (radA) [Burkholderia multivorans strain FDAARGOS_548]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTCGCGAAACGCGCGC
CCGTCCAGCGTCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAGGGCGCCGCGCCGGCCGCCGAGCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGACACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGGCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTACGCGGCGTCGCGAACCCGTCCGCGTTGTTCCTGTCGCAGCACGAGCAAGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGTCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTC
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCATGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAAGGGCTGACCGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.138

100

0.498
  radA Streptococcus pneumoniae Rx1

46.32

100

0.467
  radA Streptococcus pneumoniae D39

46.32

100

0.467
  radA Streptococcus pneumoniae R6

46.32

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.32

100

0.467
  radA Streptococcus mitis SK321

46.32

100

0.467
  radA Streptococcus mitis NCTC 12261

46.104

100

0.465

Multiple sequence alignment