Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FK544_RS09980 Genome accession   NZ_CP041304
Coordinates   1888053..1889480 (-) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain MSHS 133     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1883053..1894480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK544_RS09950 (FK544_09940) yeeZ 1883108..1883932 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FK544_RS09955 (FK544_09945) yeeY 1883978..1884907 (+) 930 WP_000803350.1 LysR substrate-binding domain-containing protein -
  FK544_RS09960 (FK544_09950) yoeI 1885122..1885184 (+) 63 WP_010723108.1 membrane protein YoeI -
  FK544_RS09965 (FK544_09955) plaP 1885174..1886532 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FK544_RS09970 (FK544_09960) tsuA 1886711..1887769 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  FK544_RS09975 (FK544_09965) tsuB 1887783..1888010 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FK544_RS09980 (FK544_09970) sbcB 1888053..1889480 (-) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  FK544_RS09985 (FK544_09975) dacD 1889689..1890855 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FK544_RS09990 (FK544_09980) sbmC 1890974..1891447 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FK544_RS09995 (FK544_09985) yeeA 1891645..1892703 (+) 1059 WP_001200905.1 FUSC family protein -
  FK544_RS10000 (FK544_09990) tmaR 1892875..1893204 (+) 330 WP_000450409.1 DUF496 family protein -
  FK544_RS10005 (FK544_09995) - 1893305..1893487 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FK544_RS10010 (FK544_10000) - 1893541..1893687 (+) 147 Protein_1746 transposase domain-containing protein -
  FK544_RS10015 (FK544_10005) - 1893976..1894056 (-) 81 Protein_1747 hypothetical protein -
  FK544_RS10020 (FK544_10010) yeeW 1894102..1894296 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=325375 FK544_RS09980 WP_000980582.1 1888053..1889480(-) (sbcB) [Escherichia coli strain MSHS 133]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=325375 FK544_RS09980 WP_000980582.1 1888053..1889480(-) (sbcB) [Escherichia coli strain MSHS 133]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCACTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581